Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 CSTP2-201ENST00000610599 398 ntBASIC15.21■□□□□ 0.03
VCANP13611 AC002472.3-201ENST00000640124 621 ntBASIC15.21■□□□□ 0.03
VCANP13611 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
VCANP13611 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VCANP13611 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.03
VCANP13611 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
VCANP13611 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC15.21■□□□□ 0.03
VCANP13611 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
VCANP13611 PTGR1-205ENST00000407693 1407 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VCANP13611 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC15.21■□□□□ 0.03
VCANP13611 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VCANP13611 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VCANP13611 SAA1-202ENST00000405158 675 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
VCANP13611 MIR1226-201ENST00000408658 75 ntBASIC15.21■□□□□ 0.03
VCANP13611 SERF2-209ENST00000409646 559 ntTSL 4 BASIC15.21■□□□□ 0.03
VCANP13611 AL157407.1-201ENST00000435784 904 ntBASIC15.21■□□□□ 0.03
VCANP13611 CDK4P1-201ENST00000454213 828 ntBASIC15.21■□□□□ 0.03
VCANP13611 AC026434.2-201ENST00000506094 1078 ntBASIC15.21■□□□□ 0.03
VCANP13611 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VCANP13611 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC15.21■□□□□ 0.03
VCANP13611 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
VCANP13611 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC15.21■□□□□ 0.03
VCANP13611 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC15.21■□□□□ 0.03
VCANP13611 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VCANP13611 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC15.21■□□□□ 0.02
VCANP13611 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
VCANP13611 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
VCANP13611 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
VCANP13611 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
VCANP13611 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
VCANP13611 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
VCANP13611 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
VCANP13611 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
VCANP13611 RNA5SP359-201ENST00000364838 113 ntBASIC15.21■□□□□ 0.02
VCANP13611 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC15.21■□□□□ 0.02
VCANP13611 AC007881.1-201ENST00000437460 187 ntBASIC15.21■□□□□ 0.02
VCANP13611 AC114947.1-202ENST00000514136 344 ntBASIC15.21■□□□□ 0.02
VCANP13611 PAX5-210ENST00000520281 969 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
VCANP13611 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
VCANP13611 C17orf62-234ENST00000584503 584 ntTSL 2 BASIC15.21■□□□□ 0.02
VCANP13611 ZNF436-AS1-201ENST00000335648 2547 ntBASIC15.21■□□□□ 0.02
VCANP13611 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VCANP13611 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
VCANP13611 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VCANP13611 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VCANP13611 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC15.2■□□□□ 0.02
VCANP13611 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VCANP13611 AC006058.4-201ENST00000624016 1670 ntBASIC15.2■□□□□ 0.02
VCANP13611 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
VCANP13611 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VCANP13611 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VCANP13611 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VCANP13611 RPL4P6-201ENST00000438116 1304 ntBASIC15.2■□□□□ 0.02
VCANP13611 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
VCANP13611 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VCANP13611 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC15.2■□□□□ 0.02
VCANP13611 AL627095.1-201ENST00000414775 321 ntBASIC15.2■□□□□ 0.02
VCANP13611 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC15.2■□□□□ 0.02
VCANP13611 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
VCANP13611 MT2A-202ENST00000561491 581 ntTSL 2 BASIC15.2■□□□□ 0.02
VCANP13611 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC15.2■□□□□ 0.02
VCANP13611 ANXA3-202ENST00000503570 1524 ntTSL 5 BASIC15.2■□□□□ 0.02
VCANP13611 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VCANP13611 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VCANP13611 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VCANP13611 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC15.2■□□□□ 0.02
VCANP13611 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
VCANP13611 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
VCANP13611 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VCANP13611 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VCANP13611 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
VCANP13611 RN7SL147P-201ENST00000487345 298 ntBASIC15.2■□□□□ 0.02
VCANP13611 LINC02507-201ENST00000509370 1028 ntTSL 3 BASIC15.2■□□□□ 0.02
VCANP13611 AC015795.2-201ENST00000512720 575 ntTSL 3 BASIC15.2■□□□□ 0.02
VCANP13611 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC15.2■□□□□ 0.02
VCANP13611 CBR3-AS1-210ENST00000623484 392 ntTSL 5 BASIC15.2■□□□□ 0.02
VCANP13611 CBR3-AS1-215ENST00000624086 594 ntTSL 5 BASIC15.2■□□□□ 0.02
VCANP13611 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VCANP13611 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VCANP13611 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VCANP13611 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VCANP13611 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VCANP13611 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VCANP13611 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VCANP13611 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC15.2■□□□□ 0.02
VCANP13611 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VCANP13611 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
VCANP13611 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VCANP13611 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC15.19■□□□□ 0.02
VCANP13611 CASP3-205ENST00000517513 964 ntTSL 5 BASIC15.19■□□□□ 0.02
VCANP13611 TRMT112P3-201ENST00000580149 358 ntBASIC15.19■□□□□ 0.02
VCANP13611 AC006547.1-209ENST00000596334 996 ntTSL 5 BASIC15.19■□□□□ 0.02
VCANP13611 CSH2-207ENST00000613718 666 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
VCANP13611 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC15.19■□□□□ 0.02
VCANP13611 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC15.19■□□□□ 0.02
VCANP13611 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
VCANP13611 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.19■□□□□ 0.02
VCANP13611 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC15.19■□□□□ 0.02
VCANP13611 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VCANP13611 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms