Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLCN3P51790 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
CLCN3P51790 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLCN3P51790 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLCN3P51790 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
CLCN3P51790 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLCN3P51790 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.54■□□□□ 0.24
CLCN3P51790 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC16.54■□□□□ 0.24
CLCN3P51790 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CLCN3P51790 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CLCN3P51790 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC16.54■□□□□ 0.24
CLCN3P51790 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLCN3P51790 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CLCN3P51790 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
CLCN3P51790 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLCN3P51790 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
CLCN3P51790 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLCN3P51790 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLCN3P51790 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLCN3P51790 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLCN3P51790 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLCN3P51790 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLCN3P51790 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLCN3P51790 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CLCN3P51790 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLCN3P51790 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
CLCN3P51790 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CLCN3P51790 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC16.54■□□□□ 0.24
CLCN3P51790 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC16.54■□□□□ 0.24
CLCN3P51790 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.54■□□□□ 0.24
CLCN3P51790 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
CLCN3P51790 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLCN3P51790 AC011270.2-201ENST00000624293 2550 ntBASIC16.54■□□□□ 0.24
CLCN3P51790 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
CLCN3P51790 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLCN3P51790 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC16.54■□□□□ 0.24
CLCN3P51790 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC16.54■□□□□ 0.24
CLCN3P51790 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLCN3P51790 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
CLCN3P51790 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CLCN3P51790 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CLCN3P51790 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLCN3P51790 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC16.54■□□□□ 0.24
CLCN3P51790 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLCN3P51790 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
CLCN3P51790 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.53■□□□□ 0.24
CLCN3P51790 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLCN3P51790 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC16.53■□□□□ 0.24
CLCN3P51790 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
CLCN3P51790 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLCN3P51790 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.53■□□□□ 0.24
CLCN3P51790 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC16.53■□□□□ 0.24
CLCN3P51790 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.53■□□□□ 0.24
CLCN3P51790 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLCN3P51790 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16.53■□□□□ 0.24
CLCN3P51790 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
CLCN3P51790 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC16.53■□□□□ 0.24
CLCN3P51790 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLCN3P51790 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
CLCN3P51790 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLCN3P51790 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLCN3P51790 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLCN3P51790 SMS-201ENST00000379404 1174 ntTSL 3 BASIC16.53■□□□□ 0.24
CLCN3P51790 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLCN3P51790 ARTN-209ENST00000479128 471 ntTSL 3 BASIC16.53■□□□□ 0.24
CLCN3P51790 AC091804.1-201ENST00000486888 567 ntBASIC16.53■□□□□ 0.24
CLCN3P51790 AC126915.1-201ENST00000522847 1038 ntBASIC16.53■□□□□ 0.24
CLCN3P51790 AL109954.1-202ENST00000564051 2148 ntBASIC16.53■□□□□ 0.24
CLCN3P51790 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC16.53■□□□□ 0.24
CLCN3P51790 MIR4783-201ENST00000580343 82 ntBASIC16.53■□□□□ 0.24
CLCN3P51790 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC16.53■□□□□ 0.24
CLCN3P51790 AC244452.3-201ENST00000636814 210 ntBASIC16.53■□□□□ 0.24
CLCN3P51790 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLCN3P51790 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC16.53■□□□□ 0.24
CLCN3P51790 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC16.53■□□□□ 0.24
CLCN3P51790 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.53■□□□□ 0.24
CLCN3P51790 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
CLCN3P51790 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
CLCN3P51790 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLCN3P51790 AC003102.2-201ENST00000589195 1469 ntBASIC16.53■□□□□ 0.24
CLCN3P51790 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLCN3P51790 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC16.53■□□□□ 0.24
CLCN3P51790 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC16.53■□□□□ 0.24
CLCN3P51790 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLCN3P51790 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLCN3P51790 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLCN3P51790 AC013268.4-201ENST00000637413 2228 ntBASIC16.53■□□□□ 0.24
CLCN3P51790 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC16.53■□□□□ 0.24
CLCN3P51790 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC16.53■□□□□ 0.24
CLCN3P51790 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLCN3P51790 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLCN3P51790 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.52■□□□□ 0.24
CLCN3P51790 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.52■□□□□ 0.24
CLCN3P51790 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLCN3P51790 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CLCN3P51790 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLCN3P51790 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
CLCN3P51790 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLCN3P51790 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC16.52■□□□□ 0.24
CLCN3P51790 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms