Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC17.43■□□□□ 0.38
CTCFP49711 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CTCFP49711 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CTCFP49711 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC17.43■□□□□ 0.38
CTCFP49711 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC17.43■□□□□ 0.38
CTCFP49711 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
CTCFP49711 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CTCFP49711 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CTCFP49711 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CTCFP49711 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC17.43■□□□□ 0.38
CTCFP49711 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
CTCFP49711 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CTCFP49711 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CTCFP49711 AP001282.1-201ENST00000531301 1499 ntBASIC17.43■□□□□ 0.38
CTCFP49711 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CTCFP49711 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CTCFP49711 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CTCFP49711 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CTCFP49711 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
CTCFP49711 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC17.42■□□□□ 0.38
CTCFP49711 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC17.42■□□□□ 0.38
CTCFP49711 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC17.42■□□□□ 0.38
CTCFP49711 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CTCFP49711 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC17.42■□□□□ 0.38
CTCFP49711 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CTCFP49711 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
CTCFP49711 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
CTCFP49711 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CTCFP49711 AL645937.2-201ENST00000396808 931 ntBASIC17.42■□□□□ 0.38
CTCFP49711 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CTCFP49711 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CTCFP49711 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC17.42■□□□□ 0.38
CTCFP49711 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CTCFP49711 RN7SL81P-201ENST00000493781 261 ntBASIC17.42■□□□□ 0.38
CTCFP49711 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC17.42■□□□□ 0.38
CTCFP49711 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CTCFP49711 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC17.42■□□□□ 0.38
CTCFP49711 AC011471.3-201ENST00000623576 402 ntBASIC17.42■□□□□ 0.38
CTCFP49711 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CTCFP49711 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CTCFP49711 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
CTCFP49711 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC17.42■□□□□ 0.38
CTCFP49711 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC17.42■□□□□ 0.38
CTCFP49711 USP4-203ENST00000415188 1454 ntTSL 3 BASIC17.42■□□□□ 0.38
CTCFP49711 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CTCFP49711 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC17.42■□□□□ 0.38
CTCFP49711 FRMPD2B-201ENST00000431305 1347 ntBASIC17.42■□□□□ 0.38
CTCFP49711 AC020931.1-201ENST00000589622 1346 ntBASIC17.42■□□□□ 0.38
CTCFP49711 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
CTCFP49711 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC17.42■□□□□ 0.38
CTCFP49711 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CTCFP49711 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CTCFP49711 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC17.42■□□□□ 0.38
CTCFP49711 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
CTCFP49711 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC17.42■□□□□ 0.38
CTCFP49711 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
CTCFP49711 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17.41■□□□□ 0.38
CTCFP49711 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
CTCFP49711 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
CTCFP49711 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC17.41■□□□□ 0.38
CTCFP49711 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CTCFP49711 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CTCFP49711 AC092364.2-201ENST00000596710 2692 ntBASIC17.41■□□□□ 0.38
CTCFP49711 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CTCFP49711 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CTCFP49711 CYP2T1P-202ENST00000641596 2535 ntBASIC17.41■□□□□ 0.38
CTCFP49711 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CTCFP49711 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.41■□□□□ 0.38
CTCFP49711 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
CTCFP49711 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CTCFP49711 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CTCFP49711 EIF3FP3-201ENST00000434851 1086 ntBASIC17.41■□□□□ 0.38
CTCFP49711 AC093909.3-201ENST00000504783 336 ntBASIC17.41■□□□□ 0.38
CTCFP49711 C5orf63-203ENST00000509733 553 ntTSL 4 BASIC17.41■□□□□ 0.38
CTCFP49711 CR383656.3-201ENST00000551315 183 ntBASIC17.41■□□□□ 0.38
CTCFP49711 EMC4-208ENST00000559078 599 ntTSL 3 BASIC17.41■□□□□ 0.38
CTCFP49711 AC027237.1-201ENST00000560942 655 ntBASIC17.41■□□□□ 0.38
CTCFP49711 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC17.41■□□□□ 0.38
CTCFP49711 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CTCFP49711 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC17.41■□□□□ 0.38
CTCFP49711 SIGLEC18P-201ENST00000602271 909 ntBASIC17.41■□□□□ 0.38
CTCFP49711 AC138466.3-201ENST00000619983 221 ntBASIC17.41■□□□□ 0.38
CTCFP49711 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CTCFP49711 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
CTCFP49711 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CTCFP49711 GCK-202ENST00000345378 2421 ntTSL 2 BASIC17.41■□□□□ 0.38
CTCFP49711 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CTCFP49711 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CTCFP49711 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CTCFP49711 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CTCFP49711 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC17.4■□□□□ 0.38
CTCFP49711 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC17.4■□□□□ 0.38
CTCFP49711 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC17.4■□□□□ 0.38
CTCFP49711 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CTCFP49711 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CTCFP49711 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CTCFP49711 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC17.4■□□□□ 0.38
CTCFP49711 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CTCFP49711 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
CTCFP49711 AC026691.1-201ENST00000602502 2017 ntBASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms