Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
ABCA1O95477 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
ABCA1O95477 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
ABCA1O95477 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC12.77□□□□□ -0.36
ABCA1O95477 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
ABCA1O95477 RNU1-114P-201ENST00000365297 166 ntBASIC12.77□□□□□ -0.36
ABCA1O95477 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
ABCA1O95477 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
ABCA1O95477 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC12.77□□□□□ -0.36
ABCA1O95477 AC253536.4-201ENST00000440539 267 ntBASIC12.77□□□□□ -0.36
ABCA1O95477 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC12.77□□□□□ -0.36
ABCA1O95477 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC12.77□□□□□ -0.36
ABCA1O95477 MIR4741-201ENST00000579822 90 ntBASIC12.77□□□□□ -0.36
ABCA1O95477 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC12.77□□□□□ -0.36
ABCA1O95477 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
ABCA1O95477 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
ABCA1O95477 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
ABCA1O95477 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
ABCA1O95477 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
ABCA1O95477 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
ABCA1O95477 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
ABCA1O95477 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
ABCA1O95477 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC12.77□□□□□ -0.37
ABCA1O95477 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC12.77□□□□□ -0.37
ABCA1O95477 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
ABCA1O95477 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
ABCA1O95477 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
ABCA1O95477 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC12.77□□□□□ -0.37
ABCA1O95477 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
ABCA1O95477 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC12.77□□□□□ -0.37
ABCA1O95477 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
ABCA1O95477 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
ABCA1O95477 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
ABCA1O95477 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
ABCA1O95477 AC112504.1-201ENST00000623415 1841 ntBASIC12.77□□□□□ -0.37
ABCA1O95477 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC12.77□□□□□ -0.37
ABCA1O95477 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
ABCA1O95477 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
ABCA1O95477 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
ABCA1O95477 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
ABCA1O95477 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
ABCA1O95477 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC12.77□□□□□ -0.37
ABCA1O95477 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC12.77□□□□□ -0.37
ABCA1O95477 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC12.77□□□□□ -0.37
ABCA1O95477 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC12.77□□□□□ -0.37
ABCA1O95477 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC12.77□□□□□ -0.37
ABCA1O95477 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC12.77□□□□□ -0.37
ABCA1O95477 AP001582.1-201ENST00000525856 295 ntBASIC12.77□□□□□ -0.37
ABCA1O95477 ACR-203ENST00000529621 708 ntTSL 5 BASIC12.77□□□□□ -0.37
ABCA1O95477 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC12.77□□□□□ -0.37
ABCA1O95477 AC005730.2-201ENST00000564549 1184 ntBASIC12.77□□□□□ -0.37
ABCA1O95477 RN7SL574P-201ENST00000581512 297 ntBASIC12.77□□□□□ -0.37
ABCA1O95477 AC132938.4-201ENST00000623835 848 ntBASIC12.77□□□□□ -0.37
ABCA1O95477 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
ABCA1O95477 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.37
ABCA1O95477 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
ABCA1O95477 AC015656.1-201ENST00000624209 3578 ntBASIC12.77□□□□□ -0.37
ABCA1O95477 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.37
ABCA1O95477 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC12.77□□□□□ -0.37
ABCA1O95477 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC12.77□□□□□ -0.37
ABCA1O95477 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
ABCA1O95477 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA1O95477 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC12.76□□□□□ -0.37
ABCA1O95477 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA1O95477 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA1O95477 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA1O95477 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA1O95477 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC12.76□□□□□ -0.37
ABCA1O95477 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA1O95477 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA1O95477 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
ABCA1O95477 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA1O95477 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
ABCA1O95477 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC12.76□□□□□ -0.37
ABCA1O95477 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA1O95477 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA1O95477 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA1O95477 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA1O95477 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA1O95477 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC12.76□□□□□ -0.37
ABCA1O95477 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA1O95477 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA1O95477 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC12.76□□□□□ -0.37
ABCA1O95477 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC12.76□□□□□ -0.37
ABCA1O95477 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
ABCA1O95477 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA1O95477 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC12.76□□□□□ -0.37
ABCA1O95477 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC12.76□□□□□ -0.37
ABCA1O95477 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC12.76□□□□□ -0.37
ABCA1O95477 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
ABCA1O95477 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC12.76□□□□□ -0.37
ABCA1O95477 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA1O95477 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA1O95477 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA1O95477 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC12.76□□□□□ -0.37
ABCA1O95477 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA1O95477 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC12.76□□□□□ -0.37
ABCA1O95477 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC12.76□□□□□ -0.37
ABCA1O95477 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA1O95477 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC12.76□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms