Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC14.82□□□□□ -0.04
HDAC3O15379 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC3O15379 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC3O15379 MX1-218ENST00000619682 1980 ntTSL 5 BASIC14.82□□□□□ -0.04
HDAC3O15379 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
HDAC3O15379 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC3O15379 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
HDAC3O15379 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC3O15379 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC3O15379 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC3O15379 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC3O15379 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC3O15379 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC14.81□□□□□ -0.04
HDAC3O15379 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC3O15379 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
HDAC3O15379 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC14.81□□□□□ -0.04
HDAC3O15379 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC3O15379 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC3O15379 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.81□□□□□ -0.04
HDAC3O15379 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC3O15379 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC14.81□□□□□ -0.04
HDAC3O15379 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC3O15379 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC14.81□□□□□ -0.04
HDAC3O15379 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC3O15379 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC3O15379 STOM-202ENST00000347359 870 ntTSL 2 BASIC14.81□□□□□ -0.04
HDAC3O15379 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC3O15379 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
HDAC3O15379 MIR940-201ENST00000401276 94 ntBASIC14.81□□□□□ -0.04
HDAC3O15379 AC004461.1-201ENST00000412461 403 ntBASIC14.81□□□□□ -0.04
HDAC3O15379 RPP21-221ENST00000428040 594 ntTSL 2 BASIC14.81□□□□□ -0.04
HDAC3O15379 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC3O15379 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC14.81□□□□□ -0.04
HDAC3O15379 AC022447.6-201ENST00000515522 438 ntBASIC14.81□□□□□ -0.04
HDAC3O15379 PGAM5P1-201ENST00000518923 814 ntBASIC14.81□□□□□ -0.04
HDAC3O15379 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC14.81□□□□□ -0.04
HDAC3O15379 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC14.81□□□□□ -0.04
HDAC3O15379 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC3O15379 MIR4453-201ENST00000584019 89 ntBASIC14.81□□□□□ -0.04
HDAC3O15379 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC3O15379 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC14.81□□□□□ -0.04
HDAC3O15379 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
HDAC3O15379 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC3O15379 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC3O15379 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC14.81□□□□□ -0.04
HDAC3O15379 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC3O15379 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC3O15379 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
HDAC3O15379 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
HDAC3O15379 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC14.81□□□□□ -0.04
HDAC3O15379 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC3O15379 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
HDAC3O15379 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC14.81□□□□□ -0.04
HDAC3O15379 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC3O15379 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC3O15379 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC3O15379 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC3O15379 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC3O15379 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC14.8□□□□□ -0.04
HDAC3O15379 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC3O15379 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC3O15379 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC3O15379 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC3O15379 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC14.8□□□□□ -0.04
HDAC3O15379 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC3O15379 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC3O15379 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC3O15379 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC3O15379 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC3O15379 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC3O15379 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC3O15379 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC14.8□□□□□ -0.04
HDAC3O15379 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC14.8□□□□□ -0.04
HDAC3O15379 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC14.8□□□□□ -0.04
HDAC3O15379 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC14.8□□□□□ -0.04
HDAC3O15379 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC14.8□□□□□ -0.04
HDAC3O15379 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
HDAC3O15379 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
HDAC3O15379 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC14.8□□□□□ -0.04
HDAC3O15379 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC3O15379 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC14.8□□□□□ -0.04
HDAC3O15379 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC3O15379 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC14.8□□□□□ -0.04
HDAC3O15379 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC3O15379 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC3O15379 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC3O15379 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC3O15379 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC3O15379 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC3O15379 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
HDAC3O15379 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC3O15379 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC3O15379 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
HDAC3O15379 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
HDAC3O15379 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC3O15379 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC3O15379 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC3O15379 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC3O15379 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC3O15379 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms