Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
SCN11AQ9UI33 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC19■□□□□ 0.63
SCN11AQ9UI33 AC008723.1-201ENST00000506922 207 ntBASIC19■□□□□ 0.63
SCN11AQ9UI33 CFL1-206ENST00000527344 962 ntTSL 2 BASIC19■□□□□ 0.63
SCN11AQ9UI33 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SCN11AQ9UI33 FOS-204ENST00000554617 796 ntTSL 2 BASIC19■□□□□ 0.63
SCN11AQ9UI33 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC19■□□□□ 0.63
SCN11AQ9UI33 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC19■□□□□ 0.63
SCN11AQ9UI33 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC19■□□□□ 0.63
SCN11AQ9UI33 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC19■□□□□ 0.63
SCN11AQ9UI33 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SCN11AQ9UI33 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC19■□□□□ 0.63
SCN11AQ9UI33 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC19■□□□□ 0.63
SCN11AQ9UI33 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC19■□□□□ 0.63
SCN11AQ9UI33 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC19■□□□□ 0.63
SCN11AQ9UI33 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SCN11AQ9UI33 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SCN11AQ9UI33 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
SCN11AQ9UI33 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SCN11AQ9UI33 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SCN11AQ9UI33 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC18.99■□□□□ 0.63
SCN11AQ9UI33 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC18.99■□□□□ 0.63
SCN11AQ9UI33 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC18.99■□□□□ 0.63
SCN11AQ9UI33 RN7SL81P-201ENST00000493781 261 ntBASIC18.99■□□□□ 0.63
SCN11AQ9UI33 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SCN11AQ9UI33 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SCN11AQ9UI33 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC18.99■□□□□ 0.63
SCN11AQ9UI33 AC073352.2-201ENST00000609385 439 ntBASIC18.99■□□□□ 0.63
SCN11AQ9UI33 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC18.99■□□□□ 0.63
SCN11AQ9UI33 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC18.99■□□□□ 0.63
SCN11AQ9UI33 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SCN11AQ9UI33 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SCN11AQ9UI33 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC18.99■□□□□ 0.63
SCN11AQ9UI33 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC18.99■□□□□ 0.63
SCN11AQ9UI33 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SCN11AQ9UI33 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC18.99■□□□□ 0.63
SCN11AQ9UI33 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.99■□□□□ 0.63
SCN11AQ9UI33 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SCN11AQ9UI33 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SCN11AQ9UI33 AGAP7P-201ENST00000582299 2062 ntBASIC18.99■□□□□ 0.63
SCN11AQ9UI33 AGAP14-201ENST00000624701 2060 ntBASIC18.99■□□□□ 0.63
SCN11AQ9UI33 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SCN11AQ9UI33 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
SCN11AQ9UI33 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC18.99■□□□□ 0.63
SCN11AQ9UI33 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
SCN11AQ9UI33 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SCN11AQ9UI33 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SCN11AQ9UI33 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SCN11AQ9UI33 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SCN11AQ9UI33 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SCN11AQ9UI33 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 MRPL22P1-201ENST00000505398 616 ntBASIC18.98■□□□□ 0.63
SCN11AQ9UI33 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 AC103691.2-201ENST00000618824 433 ntBASIC18.98■□□□□ 0.63
SCN11AQ9UI33 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 RPSAP15-201ENST00000448168 861 ntBASIC18.98■□□□□ 0.63
SCN11AQ9UI33 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 ORAOV1P1-201ENST00000503108 395 ntBASIC18.98■□□□□ 0.63
SCN11AQ9UI33 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC18.98■□□□□ 0.63
SCN11AQ9UI33 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC18.97■□□□□ 0.63
SCN11AQ9UI33 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SCN11AQ9UI33 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
SCN11AQ9UI33 PARN-202ENST00000420015 2360 ntTSL 2 BASIC18.97■□□□□ 0.63
SCN11AQ9UI33 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC18.97■□□□□ 0.63
SCN11AQ9UI33 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SCN11AQ9UI33 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SCN11AQ9UI33 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC18.97■□□□□ 0.63
SCN11AQ9UI33 AP000356.3-201ENST00000382243 753 ntBASIC18.97■□□□□ 0.63
SCN11AQ9UI33 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SCN11AQ9UI33 AL627389.1-201ENST00000413508 1182 ntBASIC18.97■□□□□ 0.63
SCN11AQ9UI33 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC18.97■□□□□ 0.63
SCN11AQ9UI33 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms