Protein–RNA interactions for Protein: Q8NHV4

NEDD1, Protein NEDD1, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1Q8NHV4 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
NEDD1Q8NHV4 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
NEDD1Q8NHV4 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
NEDD1Q8NHV4 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC17.55■□□□□ 0.4
NEDD1Q8NHV4 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC17.55■□□□□ 0.4
NEDD1Q8NHV4 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
NEDD1Q8NHV4 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC17.55■□□□□ 0.4
NEDD1Q8NHV4 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
NEDD1Q8NHV4 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
NEDD1Q8NHV4 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
NEDD1Q8NHV4 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
NEDD1Q8NHV4 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 KRTAP10-13P-201ENST00000412914 571 ntBASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 AC022494.1-201ENST00000466044 728 ntBASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 ALG3P1-201ENST00000508806 1114 ntBASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 MIR4783-201ENST00000580343 82 ntBASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 AL022328.3-201ENST00000607943 679 ntBASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 MIR6787-201ENST00000616675 61 ntBASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 HARS-202ENST00000415192 1401 ntTSL 2 BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
NEDD1Q8NHV4 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 MIR1247-201ENST00000408206 136 ntBASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 AC010141.1-201ENST00000411585 623 ntBASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 CD74-212ENST00000524315 584 ntTSL 5 BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 AC131206.1-201ENST00000538078 1211 ntBASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 BX088702.1-201ENST00000610784 235 ntBASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 AL136301.1-201ENST00000615830 422 ntBASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
NEDD1Q8NHV4 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
NEDD1Q8NHV4 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms