Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC13.45□□□□□ -0.26
SOX2P48431 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC13.45□□□□□ -0.26
SOX2P48431 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX2P48431 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX2P48431 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC13.45□□□□□ -0.26
SOX2P48431 RET-205ENST00000615310 4337 ntTSL 5 BASIC13.45□□□□□ -0.26
SOX2P48431 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX2P48431 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC13.45□□□□□ -0.26
SOX2P48431 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SOX2P48431 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
SOX2P48431 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX2P48431 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC13.44□□□□□ -0.26
SOX2P48431 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
SOX2P48431 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC13.44□□□□□ -0.26
SOX2P48431 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC13.44□□□□□ -0.26
SOX2P48431 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
SOX2P48431 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC13.44□□□□□ -0.26
SOX2P48431 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC13.44□□□□□ -0.26
SOX2P48431 FAM58DP-201ENST00000428076 619 ntBASIC13.44□□□□□ -0.26
SOX2P48431 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC13.44□□□□□ -0.26
SOX2P48431 PFN2-205ENST00000461868 613 ntTSL 2 BASIC13.44□□□□□ -0.26
SOX2P48431 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC13.44□□□□□ -0.26
SOX2P48431 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 AC022145.2-201ENST00000598203 171 ntBASIC13.44□□□□□ -0.26
SOX2P48431 AL133215.2-201ENST00000609242 977 ntBASIC13.44□□□□□ -0.26
SOX2P48431 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC13.44□□□□□ -0.26
SOX2P48431 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
SOX2P48431 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC13.44□□□□□ -0.26
SOX2P48431 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC13.44□□□□□ -0.26
SOX2P48431 AL928921.2-201ENST00000641325 2442 ntBASIC13.44□□□□□ -0.26
SOX2P48431 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
SOX2P48431 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC13.44□□□□□ -0.26
SOX2P48431 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
SOX2P48431 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
SOX2P48431 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
SOX2P48431 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
SOX2P48431 DMBT1P1-203ENST00000636837 4628 ntBASIC13.44□□□□□ -0.26
SOX2P48431 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 KRT8P12-202ENST00000472924 1397 ntBASIC13.44□□□□□ -0.26
SOX2P48431 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC13.44□□□□□ -0.26
SOX2P48431 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC13.44□□□□□ -0.26
SOX2P48431 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 MPI-203ENST00000535694 1523 ntTSL 2 BASIC13.44□□□□□ -0.26
SOX2P48431 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC13.44□□□□□ -0.26
SOX2P48431 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX2P48431 DKFZP434A062-201ENST00000573103 5021 ntBASIC13.44□□□□□ -0.26
SOX2P48431 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX2P48431 AC010327.5-201ENST00000586923 3061 ntBASIC13.43□□□□□ -0.26
SOX2P48431 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SOX2P48431 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX2P48431 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SOX2P48431 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC13.43□□□□□ -0.26
SOX2P48431 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC13.43□□□□□ -0.26
SOX2P48431 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX2P48431 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX2P48431 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX2P48431 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX2P48431 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX2P48431 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SOX2P48431 AC079781.5-202ENST00000641784 3743 ntBASIC13.43□□□□□ -0.26
SOX2P48431 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
SOX2P48431 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX2P48431 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC13.43□□□□□ -0.26
SOX2P48431 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX2P48431 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX2P48431 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX2P48431 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC13.43□□□□□ -0.26
SOX2P48431 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SOX2P48431 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC13.43□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms