Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 OCIAD1-201ENST00000264312 1414 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.134e-27■□□□□ 9.7
YBX3P16989 OCIAD1-205ENST00000444354 1756 ntTSL 3 BASIC13.48□□□□□ -0.254e-27■□□□□ 9.7
YBX3P16989 OCIAD1-203ENST00000396448 1306 ntTSL 1 (best) BASIC13.34□□□□□ -0.274e-27■□□□□ 9.7
YBX3P16989 OCIAD1-210ENST00000506801 571 ntTSL 2 BASIC12.03□□□□□ -0.484e-27■□□□□ 9.7
YBX3P16989 OCIAD1-206ENST00000502972 1916 ntTSL 211.29□□□□□ -0.64e-27■□□□□ 9.7
YBX3P16989 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC8.52□□□□□ -1.054e-27■□□□□ 9.7
YBX3P16989 OCIAD1-214ENST00000508329 448 ntTSL 55.97□□□□□ -1.454e-27■□□□□ 9.7
YBX3P16989 QARS-227ENST00000634425 520 ntTSL 513.54□□□□□ -0.247e-19■□□□□ 9.7
YBX3P16989 QARS-240ENST00000635292 574 ntTSL 411.57□□□□□ -0.567e-19■□□□□ 9.7
YBX3P16989 RACK1-218ENST00000508044 554 ntTSL 514.27□□□□□ -0.131e-323■□□□□ 9.7
YBX3P16989 AP2M1-218ENST00000480260 582 ntTSL 212.54□□□□□ -0.47e-7■□□□□ 9.7
YBX3P16989 RNH1-223ENST00000533592 2344 nt21.17■□□□□ 0.981e-12■□□□□ 9.7
YBX3P16989 CD164-204ENST00000413644 2414 ntTSL 1 (best) BASIC13.48□□□□□ -0.252e-10■□□□□ 9.7
YBX3P16989 CD164-202ENST00000310786 2993 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.752e-10■□□□□ 9.7
YBX3P16989 CD164-203ENST00000324953 2936 ntTSL 1 (best) BASIC9.76□□□□□ -0.852e-10■□□□□ 9.7
YBX3P16989 CD164-201ENST00000275080 2954 ntTSL 1 (best) BASIC9.27□□□□□ -0.922e-10■□□□□ 9.7
YBX3P16989 HUWE1-212ENST00000488459 800 ntTSL 212.87□□□□□ -0.354e-7■□□□□ 9.7
YBX3P16989 AES-210ENST00000590067 1100 ntTSL 224.09■■□□□ 1.451e-18■□□□□ 9.7
YBX3P16989 RPL38-202ENST00000439590 431 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.353e-34■□□□□ 9.7
YBX3P16989 RPL38-206ENST00000533498 532 ntAPPRIS P2 TSL 2 BASIC16.04■□□□□ 0.163e-34■□□□□ 9.7
YBX3P16989 RPL38-201ENST00000311111 1170 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.163e-34■□□□□ 9.7
YBX3P16989 RPL38-207ENST00000534490 429 ntAPPRIS ALT1 TSL 2 BASIC14.06□□□□□ -0.163e-34■□□□□ 9.7
YBX3P16989 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC5.18□□□□□ -1.583e-34■□□□□ 9.7
YBX3P16989 NUP43-205ENST00000463048 523 ntTSL 325.58■■□□□ 1.696e-11■□□□□ 9.7
YBX3P16989 SF3B2-209ENST00000530322 1163 ntTSL 521.94■■□□□ 1.16e-11■□□□□ 9.7
YBX3P16989 SF3B2-202ENST00000524475 432 ntTSL 319.32■□□□□ 0.686e-11■□□□□ 9.7
YBX3P16989 SF3B2-214ENST00000533595 1081 ntTSL 518.41■□□□□ 0.546e-11■□□□□ 9.7
YBX3P16989 SF3B2-203ENST00000524627 841 ntTSL 317.82■□□□□ 0.446e-11■□□□□ 9.7
YBX3P16989 SF3B2-212ENST00000531589 616 ntTSL 217.63■□□□□ 0.416e-11■□□□□ 9.7
YBX3P16989 SF3B2-213ENST00000533421 407 ntTSL 316.02■□□□□ 0.166e-11■□□□□ 9.7
YBX3P16989 ASNS-217ENST00000495255 1678 ntTSL 211.91□□□□□ -0.56e-11■□□□□ 9.7
YBX3P16989 SF3B2-201ENST00000322535 2903 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.666e-11■□□□□ 9.7
YBX3P16989 SF3B2-206ENST00000528302 3254 ntTSL 5 BASIC9.96□□□□□ -0.816e-11■□□□□ 9.7
YBX3P16989 ABI2-208ENST00000416001 1087 ntTSL 222.9■■□□□ 1.262e-6■□□□□ 9.7
YBX3P16989 ABI2-220ENST00000447762 741 ntTSL 422.84■■□□□ 1.252e-6■□□□□ 9.7
YBX3P16989 ABI2-217ENST00000431886 580 ntTSL 420.06■□□□□ 0.82e-6■□□□□ 9.7
YBX3P16989 ABI2-214ENST00000425253 490 ntTSL 319.52■□□□□ 0.722e-6■□□□□ 9.7
YBX3P16989 ABI2-207ENST00000413635 515 ntTSL 419.32■□□□□ 0.682e-6■□□□□ 9.7
YBX3P16989 ABI2-210ENST00000417864 1567 ntTSL 1 (best)18.59■□□□□ 0.572e-6■□□□□ 9.7
YBX3P16989 ABI2-219ENST00000444584 563 ntTSL 518.43■□□□□ 0.542e-6■□□□□ 9.7
YBX3P16989 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC17.45■□□□□ 0.382e-6■□□□□ 9.7
YBX3P16989 ABI2-205ENST00000376135 568 ntTSL 317.45■□□□□ 0.382e-6■□□□□ 9.7
YBX3P16989 ABI2-224ENST00000494215 717 ntTSL 215.68■□□□□ 0.12e-6■□□□□ 9.7
YBX3P16989 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC15.28■□□□□ 0.042e-6■□□□□ 9.7
YBX3P16989 ABI2-201ENST00000261016 6634 ntTSL 2 BASIC13.75□□□□□ -0.212e-6■□□□□ 9.7
YBX3P16989 ABI2-203ENST00000261018 6638 ntTSL 1 (best) BASIC13.75□□□□□ -0.212e-6■□□□□ 9.7
YBX3P16989 ABI2-202ENST00000261017 6484 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.232e-6■□□□□ 9.7
YBX3P16989 ABI2-218ENST00000441061 1430 ntTSL 1 (best)12.85□□□□□ -0.352e-6■□□□□ 9.7
YBX3P16989 ABI2-211ENST00000422511 2718 ntTSL 5 BASIC10.17□□□□□ -0.782e-6■□□□□ 9.7
YBX3P16989 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.68□□□□□ -1.52e-6■□□□□ 9.7
YBX3P16989 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.487e-7■□□□□ 9.7
YBX3P16989 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.487e-7■□□□□ 9.7
YBX3P16989 CCDC124-204ENST00000602080 609 ntTSL 520.28■□□□□ 0.847e-7■□□□□ 9.7
YBX3P16989 CCDC124-202ENST00000596123 580 ntTSL 217.34■□□□□ 0.377e-7■□□□□ 9.7
YBX3P16989 PHACTR4-206ENST00000632421 3375 ntTSL 213.01□□□□□ -0.334e-7■□□□□ 9.7
YBX3P16989 PHACTR4-204ENST00000493669 3078 ntTSL 1 (best)11.69□□□□□ -0.544e-7■□□□□ 9.7
YBX3P16989 PHACTR4-202ENST00000373839 6190 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.64e-7■□□□□ 9.7
YBX3P16989 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC6.93□□□□□ -1.34e-7■□□□□ 9.7
YBX3P16989 WIPI2-214ENST00000496867 745 ntTSL 523.05■■□□□ 1.283e-7■□□□□ 9.7
YBX3P16989 WIPI2-213ENST00000488359 602 ntTSL 312.02□□□□□ -0.493e-7■□□□□ 9.7
YBX3P16989 WIPI2-205ENST00000465102 643 ntTSL 211.48□□□□□ -0.573e-7■□□□□ 9.7
YBX3P16989 WIPI2-208ENST00000475309 2558 ntTSL 1 (best)10.81□□□□□ -0.683e-7■□□□□ 9.7
YBX3P16989 WIPI2-210ENST00000480238 470 ntTSL 310.73□□□□□ -0.693e-7■□□□□ 9.7
YBX3P16989 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.432e-7■□□□□ 9.7
YBX3P16989 SIAH2-203ENST00000482706 427 ntTSL 319.9■□□□□ 0.782e-7■□□□□ 9.7
YBX3P16989 CDK4-209ENST00000551800 773 ntTSL 523.33■■□□□ 1.332e-7■□□□□ 9.7
YBX3P16989 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC22.8■■□□□ 1.242e-7■□□□□ 9.7
YBX3P16989 CDK4-210ENST00000551888 636 ntTSL 222.51■■□□□ 1.192e-7■□□□□ 9.7
YBX3P16989 CDK4-207ENST00000550419 919 ntTSL 322.3■■□□□ 1.162e-7■□□□□ 9.7
YBX3P16989 CDK4-204ENST00000547281 825 ntTSL 321.8■■□□□ 1.082e-7■□□□□ 9.7
YBX3P16989 CDK4-206ENST00000549606 558 ntTSL 2 BASIC21.35■■□□□ 1.012e-7■□□□□ 9.7
YBX3P16989 CDK4-215ENST00000553237 952 ntTSL 221.28■■□□□ 12e-7■□□□□ 9.7
YBX3P16989 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.412e-7■□□□□ 9.7
YBX3P16989 CDK4-203ENST00000546489 776 ntTSL 516.58■□□□□ 0.242e-7■□□□□ 9.7
YBX3P16989 CDK4-211ENST00000552254 769 ntTSL 212.37□□□□□ -0.432e-7■□□□□ 9.7
YBX3P16989 SCML2-201ENST00000251900 4200 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.714e-7■□□□□ 9.7
YBX3P16989 HSPA4L-201ENST00000296464 10790 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.773e-6■□□□□ 9.7
YBX3P16989 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.034e-7■□□□□ 9.7
YBX3P16989 APRT-205ENST00000564858 584 ntTSL 229.33■■■□□ 2.296e-11■□□□□ 9.7
YBX3P16989 GAK-209ENST00000507580 468 ntTSL 428.24■■■□□ 2.116e-11■□□□□ 9.7
YBX3P16989 GAK-219ENST00000512325 577 ntTSL 328.24■■■□□ 2.116e-11■□□□□ 9.7
YBX3P16989 GAK-207ENST00000505819 1326 ntTSL 526.42■■□□□ 1.826e-11■□□□□ 9.7
YBX3P16989 GAK-202ENST00000502656 554 ntTSL 425.37■■□□□ 1.656e-11■□□□□ 9.7
YBX3P16989 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC23.48■■□□□ 1.356e-11■□□□□ 9.7
YBX3P16989 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.114e-7■□□□□ 9.7
YBX3P16989 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.016e-11■□□□□ 9.7
YBX3P16989 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC14.96□□□□□ -0.026e-11■□□□□ 9.7
YBX3P16989 GAK-210ENST00000507991 328 ntTSL 513.75□□□□□ -0.216e-11■□□□□ 9.7
YBX3P16989 GAK-212ENST00000510022 618 ntTSL 410.56□□□□□ -0.726e-11■□□□□ 9.7
YBX3P16989 GAK-215ENST00000511229 568 ntTSL 37.58□□□□□ -1.26e-11■□□□□ 9.7
YBX3P16989 ARHGEF2-211ENST00000471589 892 ntTSL 514.55□□□□□ -0.084e-8■□□□□ 9.7
YBX3P16989 ARHGEF2-209ENST00000470874 372 ntTSL 310.18□□□□□ -0.784e-8■□□□□ 9.7
YBX3P16989 MBNL1-209ENST00000460591 898 ntTSL 311.83□□□□□ -0.523e-7■□□□□ 9.7
YBX3P16989 SF3B1-205ENST00000424674 723 ntTSL 44.89□□□□□ -1.638e-12■□□□□ 9.7
YBX3P16989 UBE2E1-211ENST00000495141 582 ntTSL 221.26■□□□□ 0.994e-8■□□□□ 9.6
YBX3P16989 UBE2E1-204ENST00000442670 622 ntTSL 219.85■□□□□ 0.774e-8■□□□□ 9.6
YBX3P16989 NUTF2-207ENST00000570026 400 ntTSL 217.75■□□□□ 0.433e-13■□□□□ 9.6
YBX3P16989 ZNHIT3-202ENST00000612728 1981 ntTSL 1 (best)14.99□□□□□ -0.017e-9■□□□□ 9.6
YBX3P16989 ZNHIT3-206ENST00000619446 819 ntTSL 313.96□□□□□ -0.177e-9■□□□□ 9.6
YBX3P16989 ZNHIT3-209ENST00000620324 834 ntTSL 2 BASIC12.12□□□□□ -0.477e-9■□□□□ 9.6
Retrieved 100 of 29,075 protein–RNA pairs in 177 ms