RNA–Protein interactions for RNA: ENST00000424674.1

SF3B1-205, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 4

Gene SF3B1, Length 723 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-205ENST00000424674 AEBP2Q6ZN18 517 aaPredicted RBP17.64■□□□□ 0.41
SF3B1-205ENST00000424674 CHIC1Q5VXU3 224 aa16.95■□□□□ 0.3
SF3B1-205ENST00000424674 SENP3Q9H4L4 574 aaPredicted RBP15.05■□□□□ -0
SF3B1-205ENST00000424674 PHF23Q9BUL5 403 aaPredicted RBP14.85□□□□□ -0.03
SF3B1-205ENST00000424674 FOXD1Q16676 465 aa13.97□□□□□ -0.17
SF3B1-205ENST00000424674 PLPPR3Q6T4P5 718 aa13.65□□□□□ -0.22
SF3B1-205ENST00000424674 PPP6R1Q9UPN7 881 aa13.19□□□□□ -0.3
SF3B1-205ENST00000424674 ADRA2BP18089 450 aa13.17□□□□□ -0.3
SF3B1-205ENST00000424674 PIAS4Q8N2W9 510 aaPredicted RBP13.13□□□□□ -0.31
SF3B1-205ENST00000424674 MSH5O43196 834 aa13.04□□□□□ -0.32
SF3B1-205ENST00000424674 POTEDQ86YR6 584 aa12.37□□□□□ -0.43
SF3B1-205ENST00000424674 SCAF1Q9H7N4 1312 aaKnown RBP12.09□□□□□ -0.47
SF3B1-205ENST00000424674 MAPK8IP2Q13387 824 aaPredicted RBP12.03□□□□□ -0.48
SF3B1-205ENST00000424674 PPP4R3CPQ6ZMV5 832 aa11.97□□□□□ -0.49
SF3B1-205ENST00000424674 DMRT2Q9Y5R5 561 aa11.95□□□□□ -0.5
SF3B1-205ENST00000424674 CNKSR2Q8WXI2 1034 aa11.71□□□□□ -0.53
SF3B1-205ENST00000424674 HOXD11P31277 338 aaPredicted RBP11.59□□□□□ -0.55
SF3B1-205ENST00000424674 NCBP3Q53F19 620 aaKnown RBP11.59□□□□□ -0.55
SF3B1-205ENST00000424674 RNF216Q9NWF9 866 aaPredicted RBP11.56□□□□□ -0.56
SF3B1-205ENST00000424674 DCAF8L1A6NGE4 600 aa11.46□□□□□ -0.57
SF3B1-205ENST00000424674 NPM3O75607 178 aaKnown RBP11.4□□□□□ -0.58
SF3B1-205ENST00000424674 KCNA4P22459 653 aa11.35□□□□□ -0.59
SF3B1-205ENST00000424674 DNAJC5BQ9UF47 199 aa11.16□□□□□ -0.62
SF3B1-205ENST00000424674 RNF39Q9H2S5 420 aa11.13□□□□□ -0.63
SF3B1-205ENST00000424674 CACNB1Q02641 598 aaPredicted RBP11.06□□□□□ -0.64
SF3B1-205ENST00000424674 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.04□□□□□ -0.64
SF3B1-205ENST00000424674 C1QBPQ07021 282 aaKnown RBP10.98□□□□□ -0.65
SF3B1-205ENST00000424674 SLC4A2P04920 1241 aa10.83□□□□□ -0.68
SF3B1-205ENST00000424674 U3KPZ7 1027 aaPredicted RBP10.83□□□□□ -0.68
SF3B1-205ENST00000424674 SLC4A1APQ9BWU0 796 aaKnown RBP10.77□□□□□ -0.69
SF3B1-205ENST00000424674 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.62□□□□□ -0.71
SF3B1-205ENST00000424674 HNRNPUL2Q1KMD3 747 aaKnown RBP10.62□□□□□ -0.71
SF3B1-205ENST00000424674 SPINK5Q9NQ38 1064 aaPredicted RBP10.61□□□□□ -0.71
SF3B1-205ENST00000424674 CAPN15O75808 1086 aa10.6□□□□□ -0.71
SF3B1-205ENST00000424674 APLP2Q06481 763 aa10.59□□□□□ -0.71
SF3B1-205ENST00000424674 MYCNP04198 464 aaPredicted RBP10.57□□□□□ -0.72
SF3B1-205ENST00000424674 SAMD1Q6SPF0 538 aaPredicted RBP10.56□□□□□ -0.72
SF3B1-205ENST00000424674 FOXD4L1Q9NU39 408 aa10.56□□□□□ -0.72
SF3B1-205ENST00000424674 DSG3P32926 999 aa10.48□□□□□ -0.73
SF3B1-205ENST00000424674 ZNF219Q9P2Y4 722 aaPredicted RBP10.48□□□□□ -0.73
SF3B1-205ENST00000424674 TRHP20396 242 aaPredicted RBP10.47□□□□□ -0.73
SF3B1-205ENST00000424674 ZBTB22O15209 634 aa10.43□□□□□ -0.74
SF3B1-205ENST00000424674 ABCB7O75027 752 aa10.36□□□□□ -0.75
SF3B1-205ENST00000424674 ATF5Q9Y2D1 282 aaPredicted RBP10.26□□□□□ -0.77
SF3B1-205ENST00000424674 POLA2Q14181 598 aa10.21□□□□□ -0.77
SF3B1-205ENST00000424674 ATXN8OSP0DMR3 200 aa10.2□□□□□ -0.78
SF3B1-205ENST00000424674 CSRNP3Q8WYN3 585 aa10.12□□□□□ -0.79
SF3B1-205ENST00000424674 EHMT2Q96KQ7 1210 aa10.12□□□□□ -0.79
SF3B1-205ENST00000424674 ZBTB12Q9Y330 459 aaPredicted RBP10.06□□□□□ -0.8
SF3B1-205ENST00000424674 RBM42Q9BTD8 480 aaKnown RBP10.03□□□□□ -0.8
SF3B1-205ENST00000424674 OSCARQ8IYS5 282 aa9.91□□□□□ -0.82
SF3B1-205ENST00000424674 FBLN2P98095 1184 aa9.89□□□□□ -0.83
SF3B1-205ENST00000424674 AKT1S1Q96B36 256 aa9.82□□□□□ -0.84
SF3B1-205ENST00000424674 MKRN4PQ13434 485 aaPredicted RBP9.81□□□□□ -0.84
SF3B1-205ENST00000424674 SPDYE2BA6NHP3 402 aa9.75□□□□□ -0.85
SF3B1-205ENST00000424674 SPDYE6P0CI01 402 aa9.75□□□□□ -0.85
SF3B1-205ENST00000424674 SPDYE2Q495Y8 402 aa9.75□□□□□ -0.85
SF3B1-205ENST00000424674 POTEHQ6S545 545 aa9.74□□□□□ -0.85
SF3B1-205ENST00000424674 CHRDL2Q6WN34 429 aa9.71□□□□□ -0.86
SF3B1-205ENST00000424674 REM2Q8IYK8 340 aaPredicted RBP9.71□□□□□ -0.86
SF3B1-205ENST00000424674 ZNF692Q9BU19 519 aaPredicted RBP9.65□□□□□ -0.86
SF3B1-205ENST00000424674 SSUH2Q9Y2M2 353 aa9.65□□□□□ -0.86
SF3B1-205ENST00000424674 PITPNM1O00562 1244 aa9.61□□□□□ -0.87
SF3B1-205ENST00000424674 SPDYE1Q8NFV5 336 aaPredicted RBP9.54□□□□□ -0.88
SF3B1-205ENST00000424674 PABPN1Q86U42 306 aaKnown RBP eCLIP9.53□□□□□ -0.883e-12■□□□□ 8.9
SF3B1-205ENST00000424674 CLEC11AQ9Y240 323 aa9.51□□□□□ -0.89
SF3B1-205ENST00000424674 PIP4P2Q8N4L2 257 aa9.5□□□□□ -0.89
SF3B1-205ENST00000424674 FXR2P51116 673 aaKnown RBP eCLIP9.48□□□□□ -0.892e-12■■■□□ 16.7
SF3B1-205ENST00000424674 SPDYE4A6NLX3 237 aa9.46□□□□□ -0.9
SF3B1-205ENST00000424674 PRR29P0C7W0 189 aa9.37□□□□□ -0.91
SF3B1-205ENST00000424674 PRKAR2AP13861 404 aaKnown RBP9.37□□□□□ -0.91
SF3B1-205ENST00000424674 STAG3Q9UJ98 1225 aa9.32□□□□□ -0.92
SF3B1-205ENST00000424674 CHADLQ6NUI6 762 aa9.3□□□□□ -0.92
SF3B1-205ENST00000424674 HAX1O00165 279 aa9.28□□□□□ -0.92
SF3B1-205ENST00000424674 PROM2Q8N271 834 aa9.26□□□□□ -0.93
SF3B1-205ENST00000424674 SP7Q8TDD2 431 aaPredicted RBP9.23□□□□□ -0.93
SF3B1-205ENST00000424674 FKBP8Q14318 412 aa9.19□□□□□ -0.94
SF3B1-205ENST00000424674 C19orf67A6NJJ6 358 aa9.18□□□□□ -0.94
SF3B1-205ENST00000424674 CREBZFQ9NS37 354 aa9.18□□□□□ -0.94
SF3B1-205ENST00000424674 FARP1Q9Y4F1 1045 aaPredicted RBP9.18□□□□□ -0.94
SF3B1-205ENST00000424674 EVX2Q03828 476 aa9.15□□□□□ -0.94
SF3B1-205ENST00000424674 CD44P16070 742 aaKnown RBP9.09□□□□□ -0.95
SF3B1-205ENST00000424674 NPM1P06748 294 aaKnown RBP eCLIP9.04□□□□□ -0.96
SF3B1-205ENST00000424674 MNX1P50219 401 aaPredicted RBP9.04□□□□□ -0.96
SF3B1-205ENST00000424674 PLEKHG5O94827 1062 aa9□□□□□ -0.97
SF3B1-205ENST00000424674 GABBR2O75899 941 aa8.99□□□□□ -0.97
SF3B1-205ENST00000424674 MIER1Q8N108 512 aa8.99□□□□□ -0.97
SF3B1-205ENST00000424674 PAK3O75914 559 aaPredicted RBP8.98□□□□□ -0.97
SF3B1-205ENST00000424674 ZRANB1Q9UGI0 708 aa8.98□□□□□ -0.97
SF3B1-205ENST00000424674 ZNF579Q8NAF0 562 aaKnown RBP8.97□□□□□ -0.97
SF3B1-205ENST00000424674 PLCD3Q8N3E9 789 aa8.96□□□□□ -0.98
SF3B1-205ENST00000424674 FBXO3Q9UK99 471 aa8.95□□□□□ -0.98
SF3B1-205ENST00000424674 CLCN6P51797 869 aa8.94□□□□□ -0.98
SF3B1-205ENST00000424674 ZBTB47Q9UFB7 747 aaPredicted RBP8.9□□□□□ -0.98
SF3B1-205ENST00000424674 PHF12Q96QT6 1004 aa8.88□□□□□ -0.99
SF3B1-205ENST00000424674 TSPYL2Q9H2G4 693 aaPredicted RBP8.87□□□□□ -0.99
SF3B1-205ENST00000424674 VASPP50552 380 aaPredicted RBP8.84□□□□□ -0.99
SF3B1-205ENST00000424674 RASEFQ8IZ41 740 aa8.84□□□□□ -0.99
SF3B1-205ENST00000424674 GALR2O43603 387 aaPredicted RBP8.83□□□□□ -1
SF3B1-205ENST00000424674 CCDC61Q9Y6R9 512 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms