RNA–Protein interactions for RNA: ENST00000463048.3

NUP43-205, Transcript of nucleoporin 43, humanhuman

TSL 3

Gene NUP43, Length 523 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP43-205ENST00000463048 NISCHQ9Y2I1 1504 aa48.42■■■■■ 5.34
NUP43-205ENST00000463048 CCDC180Q9P1Z9 1646 aa42.84■■■■■ 4.45
NUP43-205ENST00000463048 ABCC9O60706 1549 aa41.78■■■■■ 4.28
NUP43-205ENST00000463048 DCAF8L2P0C7V8 631 aa40.59■■■■■ 4.09
NUP43-205ENST00000463048 ZCCHC6Q5VYS8 1495 aaKnown RBP40.39■■■■■ 4.06
NUP43-205ENST00000463048 RB1CC1Q8TDY2 1594 aa40.2■■■■■ 4.03
NUP43-205ENST00000463048 NACADO15069 1562 aa40.19■■■■■ 4.02
NUP43-205ENST00000463048 DCAF1Q9Y4B6 1507 aa39.95■■■■□ 3.99
NUP43-205ENST00000463048 MYO15BQ96JP2 1530 aa39.94■■■■□ 3.98
NUP43-205ENST00000463048 UNC13AQ9UPW8 1703 aa39.37■■■■□ 3.89
NUP43-205ENST00000463048 SCRIBQ14160 1630 aa39.32■■■■□ 3.88
NUP43-205ENST00000463048 PABPN1Q86U42 306 aaKnown RBP eCLIP39.15■■■■□ 3.86
NUP43-205ENST00000463048 BICRAQ9NZM4 1560 aa38.99■■■■□ 3.83
NUP43-205ENST00000463048 SHROOM4Q9ULL8 1493 aa38.74■■■■□ 3.79
NUP43-205ENST00000463048 DNAJC5BQ9UF47 199 aa38.01■■■■□ 3.68
NUP43-205ENST00000463048 EIF4G1Q04637 1599 aaKnown RBP37.94■■■■□ 3.66
NUP43-205ENST00000463048 CECR2Q9BXF3 1484 aa37.77■■■■□ 3.64
NUP43-205ENST00000463048 CC2D2AQ9P2K1 1620 aa37.73■■■■□ 3.63
NUP43-205ENST00000463048 SMARCA4P51532 1647 aa37.54■■■■□ 3.6
NUP43-205ENST00000463048 BAZ1AQ9NRL2 1556 aaPredicted RBP37.5■■■■□ 3.59
NUP43-205ENST00000463048 MROH2BQ7Z745 1585 aa37.39■■■■□ 3.58
NUP43-205ENST00000463048 ATAD2BQ9ULI0 1458 aa37.21■■■■□ 3.55
NUP43-205ENST00000463048 SMARCA2P51531 1590 aa37.16■■■■□ 3.54
NUP43-205ENST00000463048 NCAPD3P42695 1498 aa37.07■■■■□ 3.53
NUP43-205ENST00000463048 RSF1Q96T23 1441 aaPredicted RBP37.06■■■■□ 3.52
NUP43-205ENST00000463048 WIZO95785 1651 aa37.05■■■■□ 3.52
NUP43-205ENST00000463048 PEG3Q9GZU2 1588 aa37.04■■■■□ 3.52
NUP43-205ENST00000463048 BAZ1BQ9UIG0 1483 aaKnown RBP36.97■■■■□ 3.51
NUP43-205ENST00000463048 HMGXB3Q12766 1538 aa36.93■■■■□ 3.5
NUP43-205ENST00000463048 SUPT5HO00267 1087 aaKnown RBP36.6■■■■□ 3.45
NUP43-205ENST00000463048 TOP2AP11388 1531 aaKnown RBP36.59■■■■□ 3.45
NUP43-205ENST00000463048 NESP48681 1621 aa36.26■■■■□ 3.39
NUP43-205ENST00000463048 CCDC88BA6NC98 1476 aa36.2■■■■□ 3.39
NUP43-205ENST00000463048 LAMC3Q9Y6N6 1575 aa36.06■■■■□ 3.36
NUP43-205ENST00000463048 CADPSQ9ULU8 1353 aa36.06■■■■□ 3.36
NUP43-205ENST00000463048 ERCC6Q03468 1493 aa35.96■■■■□ 3.35
NUP43-205ENST00000463048 CFTRP13569 1480 aa35.9■■■■□ 3.34
NUP43-205ENST00000463048 PDS5BQ9NTI5 1447 aa35.83■■■■□ 3.33
NUP43-205ENST00000463048 KIF21AQ7Z4S6 1674 aa35.81■■■■□ 3.32
NUP43-205ENST00000463048 FANCD2Q9BXW9 1451 aa35.7■■■■□ 3.31
NUP43-205ENST00000463048 PRDM2Q13029 1718 aa35.69■■■■□ 3.3
NUP43-205ENST00000463048 CEP164Q9UPV0 1460 aa35.62■■■■□ 3.29
NUP43-205ENST00000463048 THOC2Q8NI27 1593 aaKnown RBP35.54■■■■□ 3.28
NUP43-205ENST00000463048 MRC2Q9UBG0 1479 aa35.48■■■■□ 3.27
NUP43-205ENST00000463048 URB2Q14146 1524 aaKnown RBP35.33■■■■□ 3.25
NUP43-205ENST00000463048 WDR62O43379 1518 aa35.32■■■■□ 3.24
NUP43-205ENST00000463048 CUX2O14529 1486 aa35.3■■■■□ 3.24
NUP43-205ENST00000463048 TOPBP1Q92547 1522 aa35.16■■■■□ 3.22
NUP43-205ENST00000463048 DNMBPQ6XZF7 1577 aa35.13■■■■□ 3.21
NUP43-205ENST00000463048 ABCC8Q09428 1581 aa35.08■■■■□ 3.21
NUP43-205ENST00000463048 CUX1P39880 1505 aa35.06■■■■□ 3.2
NUP43-205ENST00000463048 WRNQ14191 1432 aaPredicted RBP eCLIP34.95■■■■□ 3.19
NUP43-205ENST00000463048 POLA1P09884 1462 aaPredicted RBP34.89■■■■□ 3.18
NUP43-205ENST00000463048 FGD5Q6ZNL6 1462 aa34.89■■■■□ 3.18
NUP43-205ENST00000463048 SYNJ1O43426 1573 aa34.88■■■■□ 3.17
NUP43-205ENST00000463048 IFT140Q96RY7 1462 aa34.81■■■■□ 3.16
NUP43-205ENST00000463048 RAD54L2Q9Y4B4 1467 aa34.81■■■■□ 3.16
NUP43-205ENST00000463048 TOP2BQ02880 1626 aa34.8■■■■□ 3.16
NUP43-205ENST00000463048 BIVM-ERCC5R4GMW8 1640 aa34.79■■■■□ 3.16
NUP43-205ENST00000463048 SOGA1O94964 1423 aa34.78■■■■□ 3.16
NUP43-205ENST00000463048 TARBP1Q13395 1621 aaKnown RBP34.73■■■■□ 3.15
NUP43-205ENST00000463048 ZNF608Q9ULD9 1512 aaPredicted RBP34.72■■■■□ 3.15
NUP43-205ENST00000463048 TDRD9Q8NDG6 1382 aaKnown RBP34.59■■■■□ 3.13
NUP43-205ENST00000463048 AQRO60306 1485 aaKnown RBP eCLIP34.58■■■■□ 3.13
NUP43-205ENST00000463048 EIF4G3O43432 1585 aaKnown RBP34.57■■■■□ 3.13
NUP43-205ENST00000463048 WDR97A6NE52 1622 aa34.53■■■■□ 3.12
NUP43-205ENST00000463048 ABCA10Q8WWZ4 1543 aa34.49■■■■□ 3.11
NUP43-205ENST00000463048 TRIM41Q8WV44 630 aa34.46■■■■□ 3.11
NUP43-205ENST00000463048 GAPVD1Q14C86 1478 aa34.37■■■■□ 3.09
NUP43-205ENST00000463048 ABCA5Q8WWZ7 1642 aa34.34■■■■□ 3.09
NUP43-205ENST00000463048 PBRM1Q86U86 1689 aa34.3■■■■□ 3.08
NUP43-205ENST00000463048 GRIN2BQ13224 1484 aa34.28■■■■□ 3.08
NUP43-205ENST00000463048 CHIC1Q5VXU3 224 aa34.25■■■■□ 3.07
NUP43-205ENST00000463048 SNAPC4Q5SXM2 1469 aa34.25■■■■□ 3.07
NUP43-205ENST00000463048 FBLN2P98095 1184 aa34.2■■■■□ 3.07
NUP43-205ENST00000463048 KIF27Q86VH2 1401 aa34.17■■■■□ 3.06
NUP43-205ENST00000463048 MAGI1Q96QZ7 1491 aaPredicted RBP34.12■■■■□ 3.05
NUP43-205ENST00000463048 CHD1O14646 1710 aa34.11■■■■□ 3.05
NUP43-205ENST00000463048 RUSC2Q8N2Y8 1516 aa34.09■■■■□ 3.05
NUP43-205ENST00000463048 ERICH3Q5RHP9 1530 aa34.07■■■■□ 3.04
NUP43-205ENST00000463048 CHMP7Q8WUX9 453 aaPredicted RBP34.06■■■■□ 3.04
NUP43-205ENST00000463048 ADAMTS12P58397 1594 aa34.02■■■■□ 3.04
NUP43-205ENST00000463048 SYNJ2O15056 1496 aa34.01■■■■□ 3.04
NUP43-205ENST00000463048 OSCARQ8IYS5 282 aa33.99■■■■□ 3.03
NUP43-205ENST00000463048 IGF1RP08069 1367 aa33.98■■■■□ 3.03
NUP43-205ENST00000463048 FHAD1B1AJZ9 1412 aa33.95■■■■□ 3.02
NUP43-205ENST00000463048 FAM9AQ8IZU1 332 aaPredicted RBP33.89■■■■□ 3.02
NUP43-205ENST00000463048 DNAJC5Q9H3Z4 198 aa33.86■■■■□ 3.01
NUP43-205ENST00000463048 GRIN2AQ12879 1464 aa33.86■■■■□ 3.01
NUP43-205ENST00000463048 CUL7Q14999 1698 aa33.86■■■■□ 3.01
NUP43-205ENST00000463048 CARMIL1Q5VZK9 1371 aa33.83■■■■□ 3.01
NUP43-205ENST00000463048 CEP170Q5SW79 1584 aa33.71■■■□□ 2.99
NUP43-205ENST00000463048 CSRNP3Q8WYN3 585 aa33.7■■■□□ 2.99
NUP43-205ENST00000463048 EEA1Q15075 1411 aa33.68■■■□□ 2.98
NUP43-205ENST00000463048 CLASP1Q7Z460 1538 aa33.65■■■□□ 2.98
NUP43-205ENST00000463048 RAPGEF2Q9Y4G8 1499 aa33.64■■■□□ 2.98
NUP43-205ENST00000463048 NUP160Q12769 1436 aa33.64■■■□□ 2.98
NUP43-205ENST00000463048 PRXQ9BXM0 1461 aa33.56■■■□□ 2.96
NUP43-205ENST00000463048 EHMT2Q96KQ7 1210 aa33.55■■■□□ 2.96
NUP43-205ENST00000463048 ARHGEF11O15085 1522 aa33.44■■■□□ 2.94
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms