Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA1O95477 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA1O95477 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC12.81□□□□□ -0.36
ABCA1O95477 AGER-206ENST00000375070 1463 ntTSL 5 BASIC12.81□□□□□ -0.36
ABCA1O95477 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA1O95477 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA1O95477 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA1O95477 PTENP1-202ENST00000532280 3996 ntBASIC12.81□□□□□ -0.36
ABCA1O95477 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA1O95477 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA1O95477 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA1O95477 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC12.81□□□□□ -0.36
ABCA1O95477 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC12.81□□□□□ -0.36
ABCA1O95477 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC12.81□□□□□ -0.36
ABCA1O95477 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC12.81□□□□□ -0.36
ABCA1O95477 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC12.81□□□□□ -0.36
ABCA1O95477 RPSAP36-202ENST00000494591 1261 ntBASIC12.81□□□□□ -0.36
ABCA1O95477 KRT18P25-201ENST00000508931 1278 ntBASIC12.81□□□□□ -0.36
ABCA1O95477 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC12.81□□□□□ -0.36
ABCA1O95477 AC006453.4-201ENST00000636949 1252 ntBASIC12.81□□□□□ -0.36
ABCA1O95477 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC12.81□□□□□ -0.36
ABCA1O95477 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA1O95477 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA1O95477 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC12.81□□□□□ -0.36
ABCA1O95477 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA1O95477 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
ABCA1O95477 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA1O95477 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC12.81□□□□□ -0.36
ABCA1O95477 AMT-233ENST00000636522 1620 ntTSL 2 BASIC12.81□□□□□ -0.36
ABCA1O95477 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
ABCA1O95477 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA1O95477 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA1O95477 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA1O95477 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA1O95477 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA1O95477 NPHP3-ACAD11-201ENST00000471702 7784 ntTSL 2 BASIC12.81□□□□□ -0.36
ABCA1O95477 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
ABCA1O95477 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA1O95477 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA1O95477 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC12.81□□□□□ -0.36
ABCA1O95477 GGCT-203ENST00000409144 836 ntTSL 2 BASIC12.81□□□□□ -0.36
ABCA1O95477 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC12.81□□□□□ -0.36
ABCA1O95477 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC12.81□□□□□ -0.36
ABCA1O95477 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA1O95477 MPRIPP1-201ENST00000452433 1089 ntBASIC12.81□□□□□ -0.36
ABCA1O95477 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA1O95477 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC12.81□□□□□ -0.36
ABCA1O95477 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA1O95477 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC12.81□□□□□ -0.36
ABCA1O95477 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA1O95477 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC12.81□□□□□ -0.36
ABCA1O95477 AC020914.3-201ENST00000594712 304 ntBASIC12.81□□□□□ -0.36
ABCA1O95477 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC12.81□□□□□ -0.36
ABCA1O95477 DIO1-215ENST00000610607 796 ntTSL 5 BASIC12.81□□□□□ -0.36
ABCA1O95477 AC092850.2-201ENST00000623821 2697 ntBASIC12.81□□□□□ -0.36
ABCA1O95477 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA1O95477 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA1O95477 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA1O95477 AC105917.1-201ENST00000506637 2539 ntBASIC12.81□□□□□ -0.36
ABCA1O95477 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ABCA1O95477 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC12.8□□□□□ -0.36
ABCA1O95477 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC12.8□□□□□ -0.36
ABCA1O95477 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
ABCA1O95477 TPO-203ENST00000346956 2923 ntTSL 5 BASIC12.8□□□□□ -0.36
ABCA1O95477 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC12.8□□□□□ -0.36
ABCA1O95477 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC12.8□□□□□ -0.36
ABCA1O95477 AL138709.1-201ENST00000614840 1693 ntBASIC12.8□□□□□ -0.36
ABCA1O95477 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
ABCA1O95477 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC12.8□□□□□ -0.36
ABCA1O95477 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ABCA1O95477 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ABCA1O95477 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ABCA1O95477 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC12.8□□□□□ -0.36
ABCA1O95477 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC12.8□□□□□ -0.36
ABCA1O95477 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
ABCA1O95477 AL596087.1-201ENST00000400979 1969 ntBASIC12.8□□□□□ -0.36
ABCA1O95477 SDCCAG3P2-201ENST00000326105 1023 ntBASIC12.8□□□□□ -0.36
ABCA1O95477 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC12.8□□□□□ -0.36
ABCA1O95477 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
ABCA1O95477 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ABCA1O95477 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
ABCA1O95477 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
ABCA1O95477 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC12.8□□□□□ -0.36
ABCA1O95477 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
ABCA1O95477 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
ABCA1O95477 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ABCA1O95477 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
ABCA1O95477 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
ABCA1O95477 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ABCA1O95477 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ABCA1O95477 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ABCA1O95477 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ABCA1O95477 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ABCA1O95477 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
ABCA1O95477 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
ABCA1O95477 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
ABCA1O95477 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ABCA1O95477 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ABCA1O95477 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ABCA1O95477 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms