Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC14.39□□□□□ -0.11
SOX3P41225 CFL1-212ENST00000531413 636 ntTSL 3 BASIC14.39□□□□□ -0.11
SOX3P41225 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC14.39□□□□□ -0.11
SOX3P41225 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
SOX3P41225 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
SOX3P41225 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
SOX3P41225 AC132938.2-201ENST00000579188 680 ntBASIC14.39□□□□□ -0.11
SOX3P41225 AC015910.1-201ENST00000579400 975 ntBASIC14.39□□□□□ -0.11
SOX3P41225 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
SOX3P41225 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
SOX3P41225 BRI3BPP1-201ENST00000594224 787 ntBASIC14.39□□□□□ -0.11
SOX3P41225 AL049840.4-201ENST00000602422 811 ntBASIC14.39□□□□□ -0.11
SOX3P41225 AC000095.1-201ENST00000603208 874 ntBASIC14.39□□□□□ -0.11
SOX3P41225 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC14.39□□□□□ -0.11
SOX3P41225 IGHV3-72-202ENST00000621503 303 ntBASIC14.39□□□□□ -0.11
SOX3P41225 AL591163.1-201ENST00000641757 987 ntBASIC14.39□□□□□ -0.11
SOX3P41225 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC14.39□□□□□ -0.11
SOX3P41225 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
SOX3P41225 ILF3-AS1-201ENST00000591501 1983 ntBASIC14.39□□□□□ -0.11
SOX3P41225 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC14.39□□□□□ -0.11
SOX3P41225 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC14.39□□□□□ -0.11
SOX3P41225 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC14.39□□□□□ -0.11
SOX3P41225 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
SOX3P41225 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC14.39□□□□□ -0.11
SOX3P41225 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC14.39□□□□□ -0.11
SOX3P41225 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC14.39□□□□□ -0.11
SOX3P41225 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
SOX3P41225 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
SOX3P41225 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SOX3P41225 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SOX3P41225 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC14.38□□□□□ -0.11
SOX3P41225 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SOX3P41225 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
SOX3P41225 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
SOX3P41225 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC14.38□□□□□ -0.11
SOX3P41225 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SOX3P41225 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC14.38□□□□□ -0.11
SOX3P41225 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC14.38□□□□□ -0.11
SOX3P41225 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC14.38□□□□□ -0.11
SOX3P41225 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SOX3P41225 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
SOX3P41225 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SOX3P41225 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SOX3P41225 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SOX3P41225 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
SOX3P41225 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC14.38□□□□□ -0.11
SOX3P41225 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
SOX3P41225 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SOX3P41225 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC14.38□□□□□ -0.11
SOX3P41225 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC14.38□□□□□ -0.11
SOX3P41225 AMT-232ENST00000636199 1546 ntTSL 5 BASIC14.38□□□□□ -0.11
SOX3P41225 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
SOX3P41225 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SOX3P41225 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SOX3P41225 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC14.38□□□□□ -0.11
SOX3P41225 NSL1-201ENST00000366976 722 ntTSL 2 BASIC14.38□□□□□ -0.11
SOX3P41225 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SOX3P41225 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
SOX3P41225 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
SOX3P41225 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC14.38□□□□□ -0.11
SOX3P41225 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SOX3P41225 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC14.38□□□□□ -0.11
SOX3P41225 RN7SL837P-201ENST00000463010 287 ntBASIC14.38□□□□□ -0.11
SOX3P41225 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC14.38□□□□□ -0.11
SOX3P41225 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC14.38□□□□□ -0.11
SOX3P41225 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SOX3P41225 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC14.38□□□□□ -0.11
SOX3P41225 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC14.38□□□□□ -0.11
SOX3P41225 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SOX3P41225 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC14.38□□□□□ -0.11
SOX3P41225 AL033527.5-201ENST00000641382 801 ntBASIC14.38□□□□□ -0.11
SOX3P41225 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SOX3P41225 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC14.38□□□□□ -0.11
SOX3P41225 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SOX3P41225 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14.38□□□□□ -0.11
SOX3P41225 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC14.38□□□□□ -0.11
SOX3P41225 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC14.38□□□□□ -0.11
SOX3P41225 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SOX3P41225 AC117489.1-201ENST00000625169 3217 ntBASIC14.38□□□□□ -0.11
SOX3P41225 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
SOX3P41225 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC14.38□□□□□ -0.11
SOX3P41225 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
SOX3P41225 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SOX3P41225 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SOX3P41225 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SOX3P41225 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
SOX3P41225 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
SOX3P41225 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC14.38□□□□□ -0.11
SOX3P41225 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms