Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC17.94■□□□□ 0.46
HMGB1P09429 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
HMGB1P09429 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGB1P09429 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGB1P09429 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HMGB1P09429 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
HMGB1P09429 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC17.94■□□□□ 0.46
HMGB1P09429 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC17.93■□□□□ 0.46
HMGB1P09429 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC17.93■□□□□ 0.46
HMGB1P09429 USP35-204ENST00000530267 2419 ntTSL 2 BASIC17.93■□□□□ 0.46
HMGB1P09429 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGB1P09429 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HMGB1P09429 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGB1P09429 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HMGB1P09429 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGB1P09429 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC17.93■□□□□ 0.46
HMGB1P09429 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGB1P09429 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HMGB1P09429 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGB1P09429 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGB1P09429 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
HMGB1P09429 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HMGB1P09429 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGB1P09429 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGB1P09429 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC17.93■□□□□ 0.46
HMGB1P09429 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGB1P09429 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
HMGB1P09429 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC17.93■□□□□ 0.46
HMGB1P09429 WFDC1-204ENST00000613603 549 ntBASIC17.93■□□□□ 0.46
HMGB1P09429 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
HMGB1P09429 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGB1P09429 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
HMGB1P09429 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGB1P09429 AC023090.2-201ENST00000625182 2110 ntBASIC17.93■□□□□ 0.46
HMGB1P09429 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HMGB1P09429 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGB1P09429 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC17.93■□□□□ 0.46
HMGB1P09429 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HMGB1P09429 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGB1P09429 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGB1P09429 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGB1P09429 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC17.93■□□□□ 0.46
HMGB1P09429 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
HMGB1P09429 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
HMGB1P09429 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC17.93■□□□□ 0.46
HMGB1P09429 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGB1P09429 AC018665.1-201ENST00000622927 1362 ntBASIC17.92■□□□□ 0.46
HMGB1P09429 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGB1P09429 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGB1P09429 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HMGB1P09429 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGB1P09429 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGB1P09429 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGB1P09429 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
HMGB1P09429 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGB1P09429 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC17.92■□□□□ 0.46
HMGB1P09429 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGB1P09429 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGB1P09429 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGB1P09429 AC018529.2-202ENST00000611482 3087 ntBASIC17.92■□□□□ 0.46
HMGB1P09429 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
HMGB1P09429 ACTBP8-201ENST00000403258 1108 ntBASIC17.92■□□□□ 0.46
HMGB1P09429 WDR53-203ENST00000429115 683 ntTSL 2 BASIC17.92■□□□□ 0.46
HMGB1P09429 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC17.92■□□□□ 0.46
HMGB1P09429 KRT18P25-201ENST00000508931 1278 ntBASIC17.92■□□□□ 0.46
HMGB1P09429 POLD4-211ENST00000539074 714 ntTSL 3 BASIC17.92■□□□□ 0.46
HMGB1P09429 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC17.92■□□□□ 0.46
HMGB1P09429 AC009486.1-201ENST00000569860 813 ntBASIC17.92■□□□□ 0.46
HMGB1P09429 PAM16-204ENST00000571941 674 ntTSL 3 BASIC17.92■□□□□ 0.46
HMGB1P09429 KSR1-207ENST00000578981 748 ntTSL 4 BASIC17.92■□□□□ 0.46
HMGB1P09429 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC17.92■□□□□ 0.46
HMGB1P09429 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC17.92■□□□□ 0.46
HMGB1P09429 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
HMGB1P09429 CU634019.7-201ENST00000624153 1185 ntBASIC17.92■□□□□ 0.46
HMGB1P09429 FP236241.2-201ENST00000624906 1185 ntBASIC17.92■□□□□ 0.46
HMGB1P09429 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
HMGB1P09429 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HMGB1P09429 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
HMGB1P09429 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGB1P09429 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGB1P09429 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGB1P09429 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGB1P09429 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC17.92■□□□□ 0.46
HMGB1P09429 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGB1P09429 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
HMGB1P09429 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HMGB1P09429 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGB1P09429 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
HMGB1P09429 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HMGB1P09429 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGB1P09429 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
HMGB1P09429 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HMGB1P09429 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGB1P09429 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGB1P09429 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
HMGB1P09429 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC17.92■□□□□ 0.46
HMGB1P09429 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGB1P09429 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC17.91■□□□□ 0.46
HMGB1P09429 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
HMGB1P09429 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms