Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 CLK3P2-201ENST00000427566 1453 ntBASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 AC022144.1-201ENST00000602255 1580 ntBASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 AC023908.3-201ENST00000564211 3047 ntBASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 USP35-204ENST00000530267 2419 ntTSL 2 BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 AL589987.1-201ENST00000453380 819 ntBASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 AC135586.1-201ENST00000539323 574 ntBASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
HIF3AQ9Y2N7 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC13.77□□□□□ -0.2
HIF3AQ9Y2N7 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.2
HIF3AQ9Y2N7 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
HIF3AQ9Y2N7 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC13.77□□□□□ -0.2
HIF3AQ9Y2N7 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.2
HIF3AQ9Y2N7 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.2
HIF3AQ9Y2N7 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC13.77□□□□□ -0.2
HIF3AQ9Y2N7 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
HIF3AQ9Y2N7 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.2
HIF3AQ9Y2N7 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
HIF3AQ9Y2N7 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
HIF3AQ9Y2N7 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HIF3AQ9Y2N7 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
HIF3AQ9Y2N7 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC13.77□□□□□ -0.21
HIF3AQ9Y2N7 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HIF3AQ9Y2N7 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
HIF3AQ9Y2N7 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HIF3AQ9Y2N7 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
HIF3AQ9Y2N7 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
HIF3AQ9Y2N7 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC13.77□□□□□ -0.21
HIF3AQ9Y2N7 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC13.77□□□□□ -0.21
HIF3AQ9Y2N7 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
HIF3AQ9Y2N7 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HIF3AQ9Y2N7 SF1-209ENST00000433274 2317 ntTSL 2 BASIC13.77□□□□□ -0.21
HIF3AQ9Y2N7 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
HIF3AQ9Y2N7 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC13.77□□□□□ -0.21
HIF3AQ9Y2N7 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC13.77□□□□□ -0.21
HIF3AQ9Y2N7 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
HIF3AQ9Y2N7 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC13.77□□□□□ -0.21
HIF3AQ9Y2N7 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC13.77□□□□□ -0.21
HIF3AQ9Y2N7 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
HIF3AQ9Y2N7 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC13.77□□□□□ -0.21
HIF3AQ9Y2N7 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
HIF3AQ9Y2N7 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC13.77□□□□□ -0.21
HIF3AQ9Y2N7 RARRES2P5-201ENST00000564013 466 ntBASIC13.77□□□□□ -0.21
HIF3AQ9Y2N7 AC036164.1-201ENST00000570544 333 ntBASIC13.77□□□□□ -0.21
HIF3AQ9Y2N7 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC13.77□□□□□ -0.21
HIF3AQ9Y2N7 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HIF3AQ9Y2N7 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC13.77□□□□□ -0.21
HIF3AQ9Y2N7 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC13.77□□□□□ -0.21
HIF3AQ9Y2N7 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC13.77□□□□□ -0.21
HIF3AQ9Y2N7 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms