Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
PTP4A1Q93096 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
PTP4A1Q93096 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
PTP4A1Q93096 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC13.73□□□□□ -0.21
PTP4A1Q93096 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
PTP4A1Q93096 KRT18P43-201ENST00000469825 1281 ntBASIC13.73□□□□□ -0.21
PTP4A1Q93096 AC092183.1-201ENST00000469884 875 ntBASIC13.73□□□□□ -0.21
PTP4A1Q93096 HLA-V-204ENST00000476601 1289 ntBASIC13.73□□□□□ -0.21
PTP4A1Q93096 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
PTP4A1Q93096 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC13.73□□□□□ -0.21
PTP4A1Q93096 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
PTP4A1Q93096 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
PTP4A1Q93096 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
PTP4A1Q93096 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC13.73□□□□□ -0.21
PTP4A1Q93096 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
PTP4A1Q93096 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC13.73□□□□□ -0.21
PTP4A1Q93096 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC13.73□□□□□ -0.21
PTP4A1Q93096 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
PTP4A1Q93096 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
PTP4A1Q93096 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
PTP4A1Q93096 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
PTP4A1Q93096 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
PTP4A1Q93096 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
PTP4A1Q93096 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC13.73□□□□□ -0.21
PTP4A1Q93096 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
PTP4A1Q93096 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
PTP4A1Q93096 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
PTP4A1Q93096 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
PTP4A1Q93096 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
PTP4A1Q93096 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC13.72□□□□□ -0.21
PTP4A1Q93096 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
PTP4A1Q93096 LILRP1-201ENST00000444199 1370 ntBASIC13.72□□□□□ -0.21
PTP4A1Q93096 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC13.72□□□□□ -0.21
PTP4A1Q93096 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
PTP4A1Q93096 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
PTP4A1Q93096 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
PTP4A1Q93096 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC13.72□□□□□ -0.21
PTP4A1Q93096 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
PTP4A1Q93096 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
PTP4A1Q93096 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
PTP4A1Q93096 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
PTP4A1Q93096 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
PTP4A1Q93096 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
PTP4A1Q93096 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
PTP4A1Q93096 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC13.72□□□□□ -0.21
PTP4A1Q93096 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
PTP4A1Q93096 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
PTP4A1Q93096 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
PTP4A1Q93096 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
PTP4A1Q93096 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
PTP4A1Q93096 WRB-204ENST00000398753 699 ntTSL 3 BASIC13.72□□□□□ -0.21
PTP4A1Q93096 HLA-DRB6-201ENST00000411500 1235 ntBASIC13.72□□□□□ -0.21
PTP4A1Q93096 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC13.72□□□□□ -0.21
PTP4A1Q93096 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
PTP4A1Q93096 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
PTP4A1Q93096 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC13.72□□□□□ -0.21
PTP4A1Q93096 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC13.72□□□□□ -0.21
PTP4A1Q93096 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC13.72□□□□□ -0.21
PTP4A1Q93096 AL512361.1-201ENST00000554200 418 ntBASIC13.72□□□□□ -0.21
PTP4A1Q93096 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC13.72□□□□□ -0.21
PTP4A1Q93096 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC13.72□□□□□ -0.21
PTP4A1Q93096 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC13.72□□□□□ -0.21
PTP4A1Q93096 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
PTP4A1Q93096 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC13.72□□□□□ -0.21
PTP4A1Q93096 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
PTP4A1Q93096 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
PTP4A1Q93096 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC13.72□□□□□ -0.21
PTP4A1Q93096 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
PTP4A1Q93096 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
PTP4A1Q93096 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
PTP4A1Q93096 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
PTP4A1Q93096 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
PTP4A1Q93096 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC13.72□□□□□ -0.21
PTP4A1Q93096 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
PTP4A1Q93096 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
PTP4A1Q93096 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
PTP4A1Q93096 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
PTP4A1Q93096 AC006504.5-208ENST00000588784 2401 ntBASIC13.72□□□□□ -0.21
PTP4A1Q93096 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
PTP4A1Q93096 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
PTP4A1Q93096 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
PTP4A1Q93096 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
PTP4A1Q93096 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
PTP4A1Q93096 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
PTP4A1Q93096 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
PTP4A1Q93096 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
PTP4A1Q93096 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
PTP4A1Q93096 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
PTP4A1Q93096 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
PTP4A1Q93096 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
PTP4A1Q93096 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
PTP4A1Q93096 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC13.71□□□□□ -0.21
PTP4A1Q93096 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
PTP4A1Q93096 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
PTP4A1Q93096 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
PTP4A1Q93096 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
PTP4A1Q93096 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
PTP4A1Q93096 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
PTP4A1Q93096 AL023775.1-201ENST00000454907 1746 ntBASIC13.71□□□□□ -0.21
PTP4A1Q93096 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC13.71□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms