Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AL357563.1-201ENST00000404728 395 ntBASIC19.63■□□□□ 0.73
USP54Q70EL1 KRT8P1-201ENST00000557533 1207 ntBASIC19.63■□□□□ 0.73
USP54Q70EL1 RN7SL665P-201ENST00000578793 300 ntBASIC19.63■□□□□ 0.73
USP54Q70EL1 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC19.63■□□□□ 0.73
USP54Q70EL1 MIR6756-201ENST00000616240 63 ntBASIC19.63■□□□□ 0.73
USP54Q70EL1 AC009560.1-201ENST00000620208 434 ntBASIC19.63■□□□□ 0.73
USP54Q70EL1 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP54Q70EL1 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USP54Q70EL1 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USP54Q70EL1 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC19.63■□□□□ 0.73
USP54Q70EL1 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USP54Q70EL1 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC19.63■□□□□ 0.73
USP54Q70EL1 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USP54Q70EL1 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USP54Q70EL1 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC19.63■□□□□ 0.73
USP54Q70EL1 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP54Q70EL1 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USP54Q70EL1 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP54Q70EL1 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC19.62■□□□□ 0.73
USP54Q70EL1 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC19.62■□□□□ 0.73
USP54Q70EL1 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP54Q70EL1 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USP54Q70EL1 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP54Q70EL1 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC19.62■□□□□ 0.73
USP54Q70EL1 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC19.62■□□□□ 0.73
USP54Q70EL1 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USP54Q70EL1 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC19.62■□□□□ 0.73
USP54Q70EL1 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP54Q70EL1 AP001065.2-201ENST00000617205 644 ntBASIC19.62■□□□□ 0.73
USP54Q70EL1 MIR6769A-201ENST00000617340 73 ntBASIC19.62■□□□□ 0.73
USP54Q70EL1 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP54Q70EL1 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP54Q70EL1 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP54Q70EL1 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP54Q70EL1 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP54Q70EL1 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC19.62■□□□□ 0.73
USP54Q70EL1 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC19.62■□□□□ 0.73
USP54Q70EL1 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
USP54Q70EL1 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP54Q70EL1 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP54Q70EL1 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP54Q70EL1 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USP54Q70EL1 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USP54Q70EL1 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP54Q70EL1 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP54Q70EL1 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP54Q70EL1 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP54Q70EL1 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USP54Q70EL1 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC19.62■□□□□ 0.73
USP54Q70EL1 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP54Q70EL1 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC19.62■□□□□ 0.73
USP54Q70EL1 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC19.62■□□□□ 0.73
USP54Q70EL1 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC19.62■□□□□ 0.73
USP54Q70EL1 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC19.62■□□□□ 0.73
USP54Q70EL1 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
USP54Q70EL1 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USP54Q70EL1 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP54Q70EL1 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP54Q70EL1 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP54Q70EL1 SF1-209ENST00000433274 2317 ntTSL 2 BASIC19.62■□□□□ 0.73
USP54Q70EL1 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP54Q70EL1 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
USP54Q70EL1 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP54Q70EL1 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP54Q70EL1 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC19.61■□□□□ 0.73
USP54Q70EL1 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC19.61■□□□□ 0.73
USP54Q70EL1 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP54Q70EL1 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC19.61■□□□□ 0.73
USP54Q70EL1 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP54Q70EL1 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USP54Q70EL1 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC19.61■□□□□ 0.73
USP54Q70EL1 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC19.61■□□□□ 0.73
USP54Q70EL1 SIGLEC18P-201ENST00000602271 909 ntBASIC19.61■□□□□ 0.73
USP54Q70EL1 AC090502.4-201ENST00000551714 1386 ntBASIC19.61■□□□□ 0.73
USP54Q70EL1 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP54Q70EL1 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP54Q70EL1 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USP54Q70EL1 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USP54Q70EL1 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC19.61■□□□□ 0.73
USP54Q70EL1 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC19.61■□□□□ 0.73
USP54Q70EL1 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP54Q70EL1 CICP23-201ENST00000605013 2741 ntBASIC19.61■□□□□ 0.73
USP54Q70EL1 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP54Q70EL1 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP54Q70EL1 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP54Q70EL1 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USP54Q70EL1 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP54Q70EL1 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP54Q70EL1 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC19.6■□□□□ 0.73
USP54Q70EL1 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP54Q70EL1 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC19.6■□□□□ 0.73
USP54Q70EL1 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
USP54Q70EL1 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USP54Q70EL1 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USP54Q70EL1 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USP54Q70EL1 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC19.6■□□□□ 0.73
USP54Q70EL1 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC19.6■□□□□ 0.73
USP54Q70EL1 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC19.6■□□□□ 0.73
USP54Q70EL1 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC19.6■□□□□ 0.73
USP54Q70EL1 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms