Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC14.87□□□□□ -0.03
HDAC3O15379 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HDAC3O15379 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC14.87□□□□□ -0.03
HDAC3O15379 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC14.87□□□□□ -0.03
HDAC3O15379 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC14.87□□□□□ -0.03
HDAC3O15379 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
HDAC3O15379 LINC00628-201ENST00000628516 1289 ntBASIC14.87□□□□□ -0.03
HDAC3O15379 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDAC3O15379 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDAC3O15379 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDAC3O15379 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDAC3O15379 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDAC3O15379 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDAC3O15379 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
HDAC3O15379 USP4-203ENST00000415188 1454 ntTSL 3 BASIC14.87□□□□□ -0.03
HDAC3O15379 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDAC3O15379 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
HDAC3O15379 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC14.87□□□□□ -0.03
HDAC3O15379 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDAC3O15379 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDAC3O15379 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDAC3O15379 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDAC3O15379 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
HDAC3O15379 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HDAC3O15379 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC14.87□□□□□ -0.03
HDAC3O15379 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC3O15379 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC3O15379 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC3O15379 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
HDAC3O15379 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC14.86□□□□□ -0.03
HDAC3O15379 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC14.86□□□□□ -0.03
HDAC3O15379 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
HDAC3O15379 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
HDAC3O15379 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC3O15379 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC14.86□□□□□ -0.03
HDAC3O15379 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC3O15379 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC14.86□□□□□ -0.03
HDAC3O15379 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC3O15379 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
HDAC3O15379 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC14.86□□□□□ -0.03
HDAC3O15379 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC3O15379 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.86□□□□□ -0.03
HDAC3O15379 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC14.86□□□□□ -0.03
HDAC3O15379 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC3O15379 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
HDAC3O15379 TOMM22P5-201ENST00000416399 439 ntBASIC14.86□□□□□ -0.03
HDAC3O15379 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC14.86□□□□□ -0.03
HDAC3O15379 SERBP1P3-201ENST00000459980 809 ntBASIC14.86□□□□□ -0.03
HDAC3O15379 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC3O15379 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC14.86□□□□□ -0.03
HDAC3O15379 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC14.86□□□□□ -0.03
HDAC3O15379 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC3O15379 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC14.86□□□□□ -0.03
HDAC3O15379 SAMD11P1-201ENST00000571429 661 ntBASIC14.86□□□□□ -0.03
HDAC3O15379 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
HDAC3O15379 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC14.86□□□□□ -0.03
HDAC3O15379 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC14.86□□□□□ -0.03
HDAC3O15379 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC3O15379 GPR39-203ENST00000622084 900 ntTSL 5 BASIC14.86□□□□□ -0.03
HDAC3O15379 AF228730.6-201ENST00000641497 218 ntBASIC14.86□□□□□ -0.03
HDAC3O15379 AC084121.3-201ENST00000641716 218 ntBASIC14.86□□□□□ -0.03
HDAC3O15379 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC3O15379 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC3O15379 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC3O15379 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC3O15379 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC3O15379 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC3O15379 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
HDAC3O15379 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC3O15379 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC3O15379 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
HDAC3O15379 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC14.86□□□□□ -0.03
HDAC3O15379 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC14.86□□□□□ -0.03
HDAC3O15379 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC14.86□□□□□ -0.03
HDAC3O15379 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC3O15379 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC3O15379 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC3O15379 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC3O15379 ELL2P1-201ENST00000413990 1906 ntBASIC14.86□□□□□ -0.03
HDAC3O15379 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC14.86□□□□□ -0.03
HDAC3O15379 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
HDAC3O15379 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC3O15379 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC3O15379 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC3O15379 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC14.86□□□□□ -0.03
HDAC3O15379 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC14.85□□□□□ -0.03
HDAC3O15379 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
HDAC3O15379 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HDAC3O15379 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC14.85□□□□□ -0.03
HDAC3O15379 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC14.85□□□□□ -0.03
HDAC3O15379 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
HDAC3O15379 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
HDAC3O15379 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HDAC3O15379 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
HDAC3O15379 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HDAC3O15379 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HDAC3O15379 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HDAC3O15379 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
HDAC3O15379 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC14.85□□□□□ -0.03
HDAC3O15379 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms