Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 TMPRSS11CP-201ENST00000453277 683 ntBASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 VDAC1P7-201ENST00000462417 847 ntBASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 AC055876.2-201ENST00000531834 546 ntBASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 AC009118.2-201ENST00000613275 655 ntBASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 AL662799.1-202ENST00000614205 422 ntBASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 COCH-203ENST00000460581 2688 ntTSL 2 BASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRRC40Q9H9A6 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 AMT-204ENST00000427987 1646 ntTSL 5 BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 AL645937.2-201ENST00000396808 931 ntBASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 GNAQP1-201ENST00000444815 1067 ntBASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 CD81-207ENST00000481687 890 ntTSL 2 BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 AC093813.1-201ENST00000605066 256 ntBASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 AC099568.2-201ENST00000609194 695 ntBASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LRRC40Q9H9A6 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 AC023908.3-201ENST00000564211 3047 ntBASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms