Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 METTL26-214ENST00000614890 801 ntTSL 3 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 AC106881.1-201ENST00000605849 3329 ntBASIC11.8□□□□□ -0.52
CCDC140Q96MF4 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 PKD1P5-201ENST00000532415 10291 ntBASIC11.8□□□□□ -0.52
CCDC140Q96MF4 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 SF1-209ENST00000433274 2317 ntTSL 2 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 USE1-206ENST00000595101 1776 ntTSL 2 BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 ENPP7P5-201ENST00000541031 1031 ntBASIC11.79□□□□□ -0.52
CCDC140Q96MF4 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 AC092723.2-201ENST00000624955 793 ntBASIC11.79□□□□□ -0.52
CCDC140Q96MF4 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
CCDC140Q96MF4 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC11.78□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 194.1 ms