Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC011506.1-201ENST00000474329 610 ntBASIC9.44□□□□□ -0.9
LINC00643Q86TS7 RPS2P4-201ENST00000476944 856 ntBASIC9.44□□□□□ -0.9
LINC00643Q86TS7 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 TK1-205ENST00000590862 642 ntTSL 3 BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 KLF2-202ENST00000592003 564 ntTSL 3 BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 MIR6786-201ENST00000616843 113 ntBASIC9.44□□□□□ -0.9
LINC00643Q86TS7 AC004263.2-201ENST00000617183 678 ntBASIC9.44□□□□□ -0.9
LINC00643Q86TS7 AC092865.7-201ENST00000641832 219 ntBASIC9.44□□□□□ -0.9
LINC00643Q86TS7 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 OPLAH-204ENST00000618853 4031 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 AC008406.3-201ENST00000620001 1374 ntBASIC9.44□□□□□ -0.9
LINC00643Q86TS7 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 RBP3-201ENST00000584701 4276 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 SLC4A2-204ENST00000461735 4387 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 KRT33B-201ENST00000251646 1607 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 GBP1P1-201ENST00000394662 1740 ntBASIC9.44□□□□□ -0.9
LINC00643Q86TS7 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 VRK3-209ENST00000594948 1847 ntAPPRIS P3 TSL 2 BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 LRRFIP1P1-201ENST00000498774 2246 ntBASIC9.44□□□□□ -0.9
LINC00643Q86TS7 ABCB7-203ENST00000373394 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 ENDOV-203ENST00000517795 2548 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 SLC44A4-202ENST00000229729 2589 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 SLC13A2-201ENST00000314669 2711 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 SYNPR-209ENST00000478300 2709 ntAPPRIS P4 TSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 ARNTL-202ENST00000401424 2788 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 PLSCR4-203ENST00000433593 2839 ntTSL 2 BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 CACNA1C-231ENST00000616390 2833 ntTSL 2 BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 SPOCK3-207ENST00000504953 2900 ntAPPRIS P3 TSL 5 BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 C16orf62-215ENST00000542263 3138 ntTSL 2 BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 CTTN-201ENST00000301843 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 CELF4-218ENST00000591287 3757 ntAPPRIS ALT1 TSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 GSTM3-201ENST00000256594 4046 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 ZNF180-201ENST00000221327 4335 ntAPPRIS P3 TSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 SCARB2-215ENST00000639145 4471 ntAPPRIS ALT1 TSL 5 BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 BSDC1-201ENST00000341071 4599 ntTSL 2 BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 FAM157A-203ENST00000634862 6083 ntTSL 5 BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 CILP-201ENST00000261883 5695 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 TMEM94-201ENST00000314256 5213 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 MFSD8-241ENST00000641686 4991 ntAPPRIS P1 BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 CSPG4P12-201ENST00000558282 4853 ntBASIC9.43□□□□□ -0.9
LINC00643Q86TS7 NBN-201ENST00000265433 4666 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 DLGAP3-202ENST00000373347 3856 ntAPPRIS P1 TSL 5 BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 COBLL1-225ENST00000629362 3868 ntAPPRIS ALT2 TSL 2 BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 ADAM8-201ENST00000415217 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 CYP4F11-201ENST00000248041 2977 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 VENTX-201ENST00000325980 2911 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 LINC01993-201ENST00000374945 2934 ntTSL 2 BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 C16orf82-201ENST00000418886 2268 ntAPPRIS ALT2 BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 IL1RAP-211ENST00000439062 2244 ntAPPRIS P1 TSL 2 BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 PAK3-211ENST00000518291 2098 ntTSL 5 BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 BSCL2-206ENST00000405837 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 ANXA8-205ENST00000585281 1960 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 ARID4A-206ENST00000431317 5783 ntTSL 5 BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 MYRIP-201ENST00000302541 5077 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 PLA1A-206ENST00000495992 1695 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 AC020910.6-201ENST00000623084 1459 ntBASIC9.43□□□□□ -0.9
LINC00643Q86TS7 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 MAML3-203ENST00000509479 6844 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 SYNJ2-208ENST00000640338 3959 ntAPPRIS ALT2 TSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 GNPNAT1-201ENST00000216410 3860 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 SLC11A1-201ENST00000233202 3852 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 KLF4P1-201ENST00000412782 1185 ntBASIC9.43□□□□□ -0.9
LINC00643Q86TS7 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC9.43□□□□□ -0.9
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms