RNA–Protein interactions for RNA: ENST00000374945.1

LINC01993-201, Transcript of long intergenic non-protein coding RNA 1993, humanhuman

TSL 2 BASIC

Gene LINC01993, Length 2,934 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01993-201ENST00000374945 NISCHQ9Y2I1 1504 aa26.96■■□□□ 1.91
LINC01993-201ENST00000374945 CCDC180Q9P1Z9 1646 aa23.04■■□□□ 1.28
LINC01993-201ENST00000374945 SHROOM4Q9ULL8 1493 aa22.92■■□□□ 1.26
LINC01993-201ENST00000374945 DCAF8L2P0C7V8 631 aa22.81■■□□□ 1.24
LINC01993-201ENST00000374945 ZCCHC6Q5VYS8 1495 aaKnown RBP22.69■■□□□ 1.22
LINC01993-201ENST00000374945 SUPT5HO00267 1087 aaKnown RBP22.2■■□□□ 1.15
LINC01993-201ENST00000374945 ABCC9O60706 1549 aa22.06■■□□□ 1.12
LINC01993-201ENST00000374945 DCAF1Q9Y4B6 1507 aa21.97■■□□□ 1.11
LINC01993-201ENST00000374945 HRCP23327 699 aa21.94■■□□□ 1.1
LINC01993-201ENST00000374945 SCRIBQ14160 1630 aa21.74■■□□□ 1.07
LINC01993-201ENST00000374945 MYO15BQ96JP2 1530 aa21.71■■□□□ 1.07
LINC01993-201ENST00000374945 CHIC1Q5VXU3 224 aa21.49■■□□□ 1.03
LINC01993-201ENST00000374945 NACADO15069 1562 aa21.45■■□□□ 1.02
LINC01993-201ENST00000374945 PCGF6Q9BYE7 350 aa21.45■■□□□ 1.02
LINC01993-201ENST00000374945 PPARGC1BQ86YN6 1023 aaKnown RBP21.42■■□□□ 1.02
LINC01993-201ENST00000374945 RB1CC1Q8TDY2 1594 aa21.25■□□□□ 0.99
LINC01993-201ENST00000374945 RSF1Q96T23 1441 aaPredicted RBP21.19■□□□□ 0.98
LINC01993-201ENST00000374945 CECR2Q9BXF3 1484 aa21.19■□□□□ 0.98
LINC01993-201ENST00000374945 PABPN1Q86U42 306 aaKnown RBP eCLIP21.06■□□□□ 0.96
LINC01993-201ENST00000374945 MROH2BQ7Z745 1585 aa21.01■□□□□ 0.95
LINC01993-201ENST00000374945 UNC13AQ9UPW8 1703 aa20.99■□□□□ 0.95
LINC01993-201ENST00000374945 PELP1Q8IZL8 1130 aaKnown RBP20.91■□□□□ 0.94
LINC01993-201ENST00000374945 WIZO95785 1651 aa20.89■□□□□ 0.93
LINC01993-201ENST00000374945 LOC105371045A0A1W2PR82 267 aa20.88■□□□□ 0.93
LINC01993-201ENST00000374945 TRIM26Q12899 539 aaPredicted RBP20.87■□□□□ 0.93
LINC01993-201ENST00000374945 BICRAQ9NZM4 1560 aa20.75■□□□□ 0.91
LINC01993-201ENST00000374945 BAZ1AQ9NRL2 1556 aaPredicted RBP20.72■□□□□ 0.91
LINC01993-201ENST00000374945 SCAF1Q9H7N4 1312 aaKnown RBP20.67■□□□□ 0.9
LINC01993-201ENST00000374945 ZEB1P37275 1124 aaPredicted RBP20.65■□□□□ 0.9
LINC01993-201ENST00000374945 SMARCA4P51532 1647 aa20.64■□□□□ 0.9
LINC01993-201ENST00000374945 TRIM41Q8WV44 630 aa20.61■□□□□ 0.89
LINC01993-201ENST00000374945 FAM9AQ8IZU1 332 aaPredicted RBP20.59■□□□□ 0.89
LINC01993-201ENST00000374945 EHMT2Q96KQ7 1210 aa20.56■□□□□ 0.88
LINC01993-201ENST00000374945 TOP2AP11388 1531 aaKnown RBP20.44■□□□□ 0.86
LINC01993-201ENST00000374945 CCDC88BA6NC98 1476 aa20.42■□□□□ 0.86
LINC01993-201ENST00000374945 SMARCA2P51531 1590 aa20.36■□□□□ 0.85
LINC01993-201ENST00000374945 ABCC8Q09428 1581 aa20.3■□□□□ 0.84
LINC01993-201ENST00000374945 EIF4G1Q04637 1599 aaKnown RBP20.27■□□□□ 0.83
LINC01993-201ENST00000374945 ATAD2BQ9ULI0 1458 aa20.26■□□□□ 0.83
LINC01993-201ENST00000374945 BAZ1BQ9UIG0 1483 aaKnown RBP20.19■□□□□ 0.82
LINC01993-201ENST00000374945 ACIN1Q9UKV3 1341 aaKnown RBP20.19■□□□□ 0.82
LINC01993-201ENST00000374945 PEG3Q9GZU2 1588 aa20.17■□□□□ 0.82
LINC01993-201ENST00000374945 NEUROD1Q13562 356 aa20.13■□□□□ 0.81
LINC01993-201ENST00000374945 MYT1Q01538 1121 aa20.04■□□□□ 0.8
LINC01993-201ENST00000374945 SOGA1O94964 1423 aa20■□□□□ 0.79
LINC01993-201ENST00000374945 GTF3C3Q9Y5Q9 886 aa19.96■□□□□ 0.79
LINC01993-201ENST00000374945 RUSC2Q8N2Y8 1516 aa19.95■□□□□ 0.78
LINC01993-201ENST00000374945 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.94■□□□□ 0.78
LINC01993-201ENST00000374945 WRNQ14191 1432 aaPredicted RBP eCLIP19.93■□□□□ 0.78
LINC01993-201ENST00000374945 NCAPD3P42695 1498 aa19.89■□□□□ 0.77
LINC01993-201ENST00000374945 CENPBP07199 599 aaPredicted RBP19.88■□□□□ 0.77
LINC01993-201ENST00000374945 DIEXFQ68CQ4 756 aaKnown RBP19.88■□□□□ 0.77
LINC01993-201ENST00000374945 CCER1Q8TC90 406 aaPredicted RBP19.87■□□□□ 0.77
LINC01993-201ENST00000374945 SYNJ1O43426 1573 aa19.87■□□□□ 0.77
LINC01993-201ENST00000374945 HMGXB3Q12766 1538 aa19.81■□□□□ 0.76
LINC01993-201ENST00000374945 CSRNP3Q8WYN3 585 aa19.77■□□□□ 0.76
LINC01993-201ENST00000374945 CC2D2AQ9P2K1 1620 aa19.76■□□□□ 0.75
LINC01993-201ENST00000374945 UBTFP17480 764 aaKnown RBP19.75■□□□□ 0.75
LINC01993-201ENST00000374945 TTBK1Q5TCY1 1321 aaPredicted RBP19.73■□□□□ 0.75
LINC01993-201ENST00000374945 RANGAP1P46060 587 aaPredicted RBP19.68■□□□□ 0.74
LINC01993-201ENST00000374945 DNAJC5BQ9UF47 199 aa19.65■□□□□ 0.74
LINC01993-201ENST00000374945 CFTRP13569 1480 aa19.62■□□□□ 0.73
LINC01993-201ENST00000374945 CEP162Q5TB80 1403 aa19.6■□□□□ 0.73
LINC01993-201ENST00000374945 TOP2BQ02880 1626 aa19.58■□□□□ 0.72
LINC01993-201ENST00000374945 EEA1Q15075 1411 aa19.57■□□□□ 0.72
LINC01993-201ENST00000374945 CUX1P39880 1505 aa19.57■□□□□ 0.72
LINC01993-201ENST00000374945 ZNF316A6NFI3 1004 aaPredicted RBP19.56■□□□□ 0.72
LINC01993-201ENST00000374945 CADPSQ9ULU8 1353 aa19.53■□□□□ 0.72
LINC01993-201ENST00000374945 TNIKQ9UKE5 1360 aa19.52■□□□□ 0.72
LINC01993-201ENST00000374945 GOLGA3Q08378 1498 aa19.52■□□□□ 0.72
LINC01993-201ENST00000374945 NESP48681 1621 aa19.5■□□□□ 0.71
LINC01993-201ENST00000374945 RAPGEF2Q9Y4G8 1499 aa19.5■□□□□ 0.71
LINC01993-201ENST00000374945 BIVM-ERCC5R4GMW8 1640 aa19.48■□□□□ 0.71
LINC01993-201ENST00000374945 CEP164Q9UPV0 1460 aa19.45■□□□□ 0.7
LINC01993-201ENST00000374945 YTHDC1Q96MU7 727 aaKnown RBP19.45■□□□□ 0.7
LINC01993-201ENST00000374945 MIER1Q8N108 512 aa19.4■□□□□ 0.7
LINC01993-201ENST00000374945 KIF21BO75037 1637 aa19.38■□□□□ 0.69
LINC01993-201ENST00000374945 FANCD2Q9BXW9 1451 aa19.37■□□□□ 0.69
LINC01993-201ENST00000374945 CLIP1P30622 1438 aa19.34■□□□□ 0.69
LINC01993-201ENST00000374945 PRDM2Q13029 1718 aa19.34■□□□□ 0.69
LINC01993-201ENST00000374945 KIF27Q86VH2 1401 aa19.32■□□□□ 0.68
LINC01993-201ENST00000374945 CUX2O14529 1486 aa19.32■□□□□ 0.68
LINC01993-201ENST00000374945 FGD5Q6ZNL6 1462 aa19.32■□□□□ 0.68
LINC01993-201ENST00000374945 PRXQ9BXM0 1461 aa19.27■□□□□ 0.67
LINC01993-201ENST00000374945 RAD54L2Q9Y4B4 1467 aa19.25■□□□□ 0.67
LINC01993-201ENST00000374945 IGF1RP08069 1367 aa19.2■□□□□ 0.66
LINC01993-201ENST00000374945 TOPBP1Q92547 1522 aa19.17■□□□□ 0.66
LINC01993-201ENST00000374945 POLA1P09884 1462 aaPredicted RBP19.16■□□□□ 0.66
LINC01993-201ENST00000374945 VPS8Q8N3P4 1428 aa19.15■□□□□ 0.66
LINC01993-201ENST00000374945 ERICH3Q5RHP9 1530 aa19.14■□□□□ 0.66
LINC01993-201ENST00000374945 URB2Q14146 1524 aaKnown RBP19.13■□□□□ 0.65
LINC01993-201ENST00000374945 DNMBPQ6XZF7 1577 aa19.12■□□□□ 0.65
LINC01993-201ENST00000374945 CARMIL1Q5VZK9 1371 aa19.11■□□□□ 0.65
LINC01993-201ENST00000374945 CLSPNQ9HAW4 1339 aa19.11■□□□□ 0.65
LINC01993-201ENST00000374945 APLP2Q06481 763 aa19.11■□□□□ 0.65
LINC01993-201ENST00000374945 LAMC3Q9Y6N6 1575 aa19.1■□□□□ 0.65
LINC01993-201ENST00000374945 HNRNPUL2Q1KMD3 747 aaKnown RBP19.1■□□□□ 0.65
LINC01993-201ENST00000374945 SUPT16HQ9Y5B9 1047 aaKnown RBP19.09■□□□□ 0.65
LINC01993-201ENST00000374945 ARAP1Q96P48 1450 aa19.08■□□□□ 0.65
LINC01993-201ENST00000374945 TDRD9Q8NDG6 1382 aaKnown RBP19.08■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms