RNA–Protein interactions for RNA: ENST00000558282.5

CSPG4P12-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

BASIC

Gene CSPG4P12, Length 4,853 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-201ENST00000558282 PELP1Q8IZL8 1130 aaKnown RBP19.36■□□□□ 0.69
CSPG4P12-201ENST00000558282 MYT1Q01538 1121 aa19.34■□□□□ 0.69
CSPG4P12-201ENST00000558282 NISCHQ9Y2I1 1504 aa19.22■□□□□ 0.67
CSPG4P12-201ENST00000558282 CENPBP07199 599 aaPredicted RBP18.54■□□□□ 0.56
CSPG4P12-201ENST00000558282 DCAF8L2P0C7V8 631 aa18.48■□□□□ 0.55
CSPG4P12-201ENST00000558282 SUPT5HO00267 1087 aaKnown RBP18.43■□□□□ 0.54
CSPG4P12-201ENST00000558282 ERICH6Q7L0X2 663 aa18.4■□□□□ 0.54
CSPG4P12-201ENST00000558282 CCER1Q8TC90 406 aaPredicted RBP18.4■□□□□ 0.54
CSPG4P12-201ENST00000558282 ZEB1P37275 1124 aaPredicted RBP18.36■□□□□ 0.53
CSPG4P12-201ENST00000558282 PCGF6Q9BYE7 350 aa18.16■□□□□ 0.5
CSPG4P12-201ENST00000558282 NEFLP07196 543 aa17.84■□□□□ 0.45
CSPG4P12-201ENST00000558282 APLP2Q06481 763 aa17.83■□□□□ 0.45
CSPG4P12-201ENST00000558282 TTBK1Q5TCY1 1321 aaPredicted RBP17.81■□□□□ 0.44
CSPG4P12-201ENST00000558282 HRCP23327 699 aa17.76■□□□□ 0.43
CSPG4P12-201ENST00000558282 SHROOM4Q9ULL8 1493 aa17.67■□□□□ 0.42
CSPG4P12-201ENST00000558282 YTHDC1Q96MU7 727 aaKnown RBP17.65■□□□□ 0.42
CSPG4P12-201ENST00000558282 EHMT2Q96KQ7 1210 aa17.63■□□□□ 0.41
CSPG4P12-201ENST00000558282 TRIM26Q12899 539 aaPredicted RBP17.43■□□□□ 0.38
CSPG4P12-201ENST00000558282 FAM9AQ8IZU1 332 aaPredicted RBP17.33■□□□□ 0.37
CSPG4P12-201ENST00000558282 DAXXQ9UER7 740 aaPredicted RBP17.32■□□□□ 0.36
CSPG4P12-201ENST00000558282 RTL5Q5HYW3 569 aaPredicted RBP17.3■□□□□ 0.36
CSPG4P12-201ENST00000558282 TRIM41Q8WV44 630 aa17.14■□□□□ 0.33
CSPG4P12-201ENST00000558282 GTF3C3Q9Y5Q9 886 aa17.04■□□□□ 0.32
CSPG4P12-201ENST00000558282 DIEXFQ68CQ4 756 aaKnown RBP17.04■□□□□ 0.32
CSPG4P12-201ENST00000558282 PPARGC1BQ86YN6 1023 aaKnown RBP17.03■□□□□ 0.32
CSPG4P12-201ENST00000558282 ZNF316A6NFI3 1004 aaPredicted RBP16.91■□□□□ 0.3
CSPG4P12-201ENST00000558282 MYT1LQ9UL68 1186 aa16.89■□□□□ 0.29
CSPG4P12-201ENST00000558282 ACIN1Q9UKV3 1341 aaKnown RBP16.89■□□□□ 0.29
CSPG4P12-201ENST00000558282 UBTFP17480 764 aaKnown RBP16.86■□□□□ 0.29
CSPG4P12-201ENST00000558282 GLIPR1L2Q4G1C9 344 aa16.82■□□□□ 0.28
CSPG4P12-201ENST00000558282 CLSPNQ9HAW4 1339 aa16.82■□□□□ 0.28
CSPG4P12-201ENST00000558282 CDK11AQ9UQ88 783 aaPredicted RBP16.8■□□□□ 0.28
CSPG4P12-201ENST00000558282 RANGAP1P46060 587 aaPredicted RBP16.68■□□□□ 0.26
CSPG4P12-201ENST00000558282 CHIC1Q5VXU3 224 aa16.64■□□□□ 0.25
CSPG4P12-201ENST00000558282 EIF5BO60841 1220 aaKnown RBP16.63■□□□□ 0.25
CSPG4P12-201ENST00000558282 ATP1B4Q9UN42 357 aaPredicted RBP16.59■□□□□ 0.25
CSPG4P12-201ENST00000558282 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.59■□□□□ 0.25
CSPG4P12-201ENST00000558282 BCANQ96GW7 911 aa16.59■□□□□ 0.25
CSPG4P12-201ENST00000558282 ANP32AP39687 249 aaKnown RBP16.56■□□□□ 0.24
CSPG4P12-201ENST00000558282 LOC105371045A0A1W2PR82 267 aa16.55■□□□□ 0.24
CSPG4P12-201ENST00000558282 HNRNPUL2Q1KMD3 747 aaKnown RBP16.51■□□□□ 0.23
CSPG4P12-201ENST00000558282 ANP32CO43423 234 aa16.42■□□□□ 0.22
CSPG4P12-201ENST00000558282 POLR3GLQ9BT43 218 aa16.4■□□□□ 0.22
CSPG4P12-201ENST00000558282 SCAF1Q9H7N4 1312 aaKnown RBP16.39■□□□□ 0.21
CSPG4P12-201ENST00000558282 CCDC180Q9P1Z9 1646 aa16.38■□□□□ 0.21
CSPG4P12-201ENST00000558282 ITGAEP38570 1179 aa16.34■□□□□ 0.21
CSPG4P12-201ENST00000558282 ANP32EQ9BTT0 268 aa16.33■□□□□ 0.2
CSPG4P12-201ENST00000558282 ANP32BQ92688 251 aaKnown RBP16.31■□□□□ 0.2
CSPG4P12-201ENST00000558282 NEUROD1Q13562 356 aa16.29■□□□□ 0.2
CSPG4P12-201ENST00000558282 FKBP8Q14318 412 aa16.23■□□□□ 0.19
CSPG4P12-201ENST00000558282 ZBTB47Q9UFB7 747 aaPredicted RBP16.19■□□□□ 0.18
CSPG4P12-201ENST00000558282 CNGB1Q14028 1251 aaPredicted RBP16.18■□□□□ 0.18
CSPG4P12-201ENST00000558282 BCL11AQ9H165 835 aa16.15■□□□□ 0.18
CSPG4P12-201ENST00000558282 NPM2Q86SE8 214 aaKnown RBP16.13■□□□□ 0.17
CSPG4P12-201ENST00000558282 NBR1Q14596 966 aa16.11■□□□□ 0.17
CSPG4P12-201ENST00000558282 ZCCHC6Q5VYS8 1495 aaKnown RBP16.08■□□□□ 0.16
CSPG4P12-201ENST00000558282 DCAF1Q9Y4B6 1507 aa16.05■□□□□ 0.16
CSPG4P12-201ENST00000558282 TNNT2P45379 298 aaPredicted RBP16.04■□□□□ 0.16
CSPG4P12-201ENST00000558282 UPF2Q9HAU5 1272 aaKnown RBP16.02■□□□□ 0.15
CSPG4P12-201ENST00000558282 ERICH6BQ5W0A0 696 aa16.01■□□□□ 0.15
CSPG4P12-201ENST00000558282 CANXP27824 592 aaKnown RBP15.97■□□□□ 0.15
CSPG4P12-201ENST00000558282 CCDC136Q96JN2 1154 aa15.92■□□□□ 0.14
CSPG4P12-201ENST00000558282 FAM50AQ14320 339 aaKnown RBP15.92■□□□□ 0.14
CSPG4P12-201ENST00000558282 DDRGK1Q96HY6 314 aa15.92■□□□□ 0.14
CSPG4P12-201ENST00000558282 HSP90AA1P07900 732 aaKnown RBP15.91■□□□□ 0.14
CSPG4P12-201ENST00000558282 ABCC9O60706 1549 aa15.91■□□□□ 0.14
CSPG4P12-201ENST00000558282 HNRNPUQ00839 825 aaKnown RBP eCLIP15.9■□□□□ 0.14
CSPG4P12-201ENST00000558282 PPM1GO15355 546 aaPredicted RBP15.89■□□□□ 0.13
CSPG4P12-201ENST00000558282 TRIM52Q96A61 297 aa15.87■□□□□ 0.13
CSPG4P12-201ENST00000558282 TRIM44Q96DX7 344 aaPredicted RBP15.86■□□□□ 0.13
CSPG4P12-201ENST00000558282 SLC4A1APQ9BWU0 796 aaKnown RBP15.86■□□□□ 0.13
CSPG4P12-201ENST00000558282 NEFMP07197 916 aa15.86■□□□□ 0.13
CSPG4P12-201ENST00000558282 MIER1Q8N108 512 aa15.8■□□□□ 0.12
CSPG4P12-201ENST00000558282 NCLP19338 710 aaKnown RBP15.79■□□□□ 0.12
CSPG4P12-201ENST00000558282 BECN1Q14457 450 aa15.76■□□□□ 0.11
CSPG4P12-201ENST00000558282 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.75■□□□□ 0.11
CSPG4P12-201ENST00000558282 NAP1L5Q96NT1 182 aaPredicted RBP15.74■□□□□ 0.11
CSPG4P12-201ENST00000558282 CDK11BP21127 795 aaKnown RBP15.73■□□□□ 0.11
CSPG4P12-201ENST00000558282 NOP58Q9Y2X3 529 aaKnown RBP15.73■□□□□ 0.11
CSPG4P12-201ENST00000558282 DEKP35659 375 aaKnown RBP15.72■□□□□ 0.11
CSPG4P12-201ENST00000558282 DDX10Q13206 875 aaKnown RBP15.72■□□□□ 0.11
CSPG4P12-201ENST00000558282 ARXQ96QS3 562 aa15.7■□□□□ 0.1
CSPG4P12-201ENST00000558282 RTN4Q9NQC3 1192 aaKnown RBP15.68■□□□□ 0.1
CSPG4P12-201ENST00000558282 ZNF326Q5BKZ1 582 aaKnown RBP15.67■□□□□ 0.1
CSPG4P12-201ENST00000558282 FAM9BQ8IZU0 186 aa15.66■□□□□ 0.1
CSPG4P12-201ENST00000558282 GOLGA6L22H0YM25 854 aa15.66■□□□□ 0.1
CSPG4P12-201ENST00000558282 TONSLQ96HA7 1378 aa15.64■□□□□ 0.1
CSPG4P12-201ENST00000558282 SUPT16HQ9Y5B9 1047 aaKnown RBP15.64■□□□□ 0.09
CSPG4P12-201ENST00000558282 PPP4R2Q9NY27 417 aa15.59■□□□□ 0.09
CSPG4P12-201ENST00000558282 L1TD1Q5T7N2 865 aaKnown RBP15.58■□□□□ 0.08
CSPG4P12-201ENST00000558282 NACADO15069 1562 aa15.57■□□□□ 0.08
CSPG4P12-201ENST00000558282 CSRNP3Q8WYN3 585 aa15.56■□□□□ 0.08
CSPG4P12-201ENST00000558282 MRS2Q9HD23 443 aa15.56■□□□□ 0.08
CSPG4P12-201ENST00000558282 TMC1Q8TDI8 760 aa15.56■□□□□ 0.08
CSPG4P12-201ENST00000558282 IRX6P78412 446 aaPredicted RBP15.55■□□□□ 0.08
CSPG4P12-201ENST00000558282 RBM19Q9Y4C8 960 aaKnown RBP15.53■□□□□ 0.08
CSPG4P12-201ENST00000558282 DNTTIP2Q5QJE6 756 aaKnown RBP15.53■□□□□ 0.08
CSPG4P12-201ENST00000558282 PTMAP06454 111 aaKnown RBP15.52■□□□□ 0.08
CSPG4P12-201ENST00000558282 RB1CC1Q8TDY2 1594 aa15.51■□□□□ 0.07
CSPG4P12-201ENST00000558282 LAS1LQ9Y4W2 734 aaKnown RBP15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms