Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 CYP51A1P3-201ENST00000400072 1428 ntBASIC18.86■□□□□ 0.61
RC3H1Q5TC82 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 SOD2-202ENST00000367054 815 ntTSL 2 BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 BANF1P3-201ENST00000412556 261 ntBASIC18.86■□□□□ 0.61
RC3H1Q5TC82 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 KRT18P66-201ENST00000452970 1269 ntBASIC18.86■□□□□ 0.61
RC3H1Q5TC82 BUD31-205ENST00000456893 512 ntTSL 5 BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 AC131206.1-201ENST00000538078 1211 ntBASIC18.86■□□□□ 0.61
RC3H1Q5TC82 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 AC009560.1-201ENST00000620208 434 ntBASIC18.86■□□□□ 0.61
RC3H1Q5TC82 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 AL359258.3-201ENST00000622910 2331 ntBASIC18.86■□□□□ 0.61
RC3H1Q5TC82 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RC3H1Q5TC82 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
RC3H1Q5TC82 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RC3H1Q5TC82 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
RC3H1Q5TC82 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RC3H1Q5TC82 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RC3H1Q5TC82 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RC3H1Q5TC82 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
RC3H1Q5TC82 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RC3H1Q5TC82 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC18.85■□□□□ 0.61
RC3H1Q5TC82 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RC3H1Q5TC82 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RC3H1Q5TC82 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RC3H1Q5TC82 CHCHD2P9-201ENST00000461726 456 ntBASIC18.85■□□□□ 0.61
RC3H1Q5TC82 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC18.85■□□□□ 0.61
RC3H1Q5TC82 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC18.85■□□□□ 0.61
RC3H1Q5TC82 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC18.85■□□□□ 0.61
RC3H1Q5TC82 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
RC3H1Q5TC82 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
RC3H1Q5TC82 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC18.85■□□□□ 0.61
RC3H1Q5TC82 DDX5-235ENST00000630471 473 ntTSL 4 BASIC18.85■□□□□ 0.61
RC3H1Q5TC82 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
RC3H1Q5TC82 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC18.85■□□□□ 0.61
RC3H1Q5TC82 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RC3H1Q5TC82 AC015909.3-201ENST00000572855 1794 ntBASIC18.85■□□□□ 0.61
RC3H1Q5TC82 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
RC3H1Q5TC82 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RC3H1Q5TC82 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
RC3H1Q5TC82 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC18.85■□□□□ 0.61
RC3H1Q5TC82 AP003680.1-201ENST00000598970 3660 ntBASIC18.85■□□□□ 0.61
RC3H1Q5TC82 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC18.85■□□□□ 0.61
RC3H1Q5TC82 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RC3H1Q5TC82 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
RC3H1Q5TC82 WT1-209ENST00000530998 2421 ntTSL 2 BASIC18.84■□□□□ 0.61
RC3H1Q5TC82 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC18.84■□□□□ 0.61
RC3H1Q5TC82 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RC3H1Q5TC82 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RC3H1Q5TC82 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RC3H1Q5TC82 ABR-203ENST00000536794 2213 ntTSL 2 BASIC18.84■□□□□ 0.61
RC3H1Q5TC82 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC18.84■□□□□ 0.61
RC3H1Q5TC82 AC025271.4-201ENST00000621477 1726 ntBASIC18.84■□□□□ 0.61
RC3H1Q5TC82 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RC3H1Q5TC82 MBP-201ENST00000354542 575 ntTSL 2 BASIC18.84■□□□□ 0.61
RC3H1Q5TC82 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
RC3H1Q5TC82 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
RC3H1Q5TC82 DUTP3-201ENST00000450025 415 ntBASIC18.84■□□□□ 0.61
RC3H1Q5TC82 AC079112.1-201ENST00000454972 939 ntBASIC18.84■□□□□ 0.61
RC3H1Q5TC82 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RC3H1Q5TC82 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC18.84■□□□□ 0.61
RC3H1Q5TC82 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC18.84■□□□□ 0.61
RC3H1Q5TC82 AC093752.3-201ENST00000567343 901 ntBASIC18.84■□□□□ 0.61
RC3H1Q5TC82 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
RC3H1Q5TC82 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC18.84■□□□□ 0.61
RC3H1Q5TC82 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC18.84■□□□□ 0.61
RC3H1Q5TC82 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC18.84■□□□□ 0.61
RC3H1Q5TC82 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
RC3H1Q5TC82 PCDH8P1-201ENST00000428983 2773 ntBASIC18.84■□□□□ 0.61
RC3H1Q5TC82 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RC3H1Q5TC82 AC090616.6-203ENST00000579186 1945 ntBASIC18.84■□□□□ 0.61
RC3H1Q5TC82 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC18.84■□□□□ 0.61
RC3H1Q5TC82 SALL4P5-201ENST00000419001 1760 ntBASIC18.83■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms