Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
SCN4AP35499 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SCN4AP35499 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SCN4AP35499 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SCN4AP35499 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SCN4AP35499 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SCN4AP35499 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
SCN4AP35499 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
SCN4AP35499 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC17.49■□□□□ 0.39
SCN4AP35499 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC17.49■□□□□ 0.39
SCN4AP35499 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC17.49■□□□□ 0.39
SCN4AP35499 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC17.49■□□□□ 0.39
SCN4AP35499 ST13P19-201ENST00000442505 1124 ntBASIC17.49■□□□□ 0.39
SCN4AP35499 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC17.49■□□□□ 0.39
SCN4AP35499 AC003686.1-201ENST00000550956 1034 ntBASIC17.49■□□□□ 0.39
SCN4AP35499 TRMT112P3-201ENST00000580149 358 ntBASIC17.49■□□□□ 0.39
SCN4AP35499 AC010632.2-201ENST00000588369 1224 ntBASIC17.49■□□□□ 0.39
SCN4AP35499 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC17.49■□□□□ 0.39
SCN4AP35499 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SCN4AP35499 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC17.49■□□□□ 0.39
SCN4AP35499 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SCN4AP35499 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SCN4AP35499 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SCN4AP35499 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
SCN4AP35499 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SCN4AP35499 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
SCN4AP35499 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SCN4AP35499 AL596087.1-201ENST00000400979 1969 ntBASIC17.49■□□□□ 0.39
SCN4AP35499 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.49■□□□□ 0.39
SCN4AP35499 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
SCN4AP35499 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SCN4AP35499 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SCN4AP35499 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SCN4AP35499 AC112504.1-201ENST00000623415 1841 ntBASIC17.49■□□□□ 0.39
SCN4AP35499 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SCN4AP35499 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SCN4AP35499 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.49■□□□□ 0.39
SCN4AP35499 MIR566-201ENST00000385187 94 ntBASIC17.49■□□□□ 0.39
SCN4AP35499 MIR645-201ENST00000385283 94 ntBASIC17.49■□□□□ 0.39
SCN4AP35499 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SCN4AP35499 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC17.49■□□□□ 0.39
SCN4AP35499 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC17.49■□□□□ 0.39
SCN4AP35499 ALG1L3P-201ENST00000503331 765 ntBASIC17.49■□□□□ 0.39
SCN4AP35499 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SCN4AP35499 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SCN4AP35499 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC17.49■□□□□ 0.39
SCN4AP35499 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC17.49■□□□□ 0.39
SCN4AP35499 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC17.49■□□□□ 0.39
SCN4AP35499 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC17.49■□□□□ 0.39
SCN4AP35499 AL592295.3-201ENST00000637155 863 ntTSL 5 BASIC17.49■□□□□ 0.39
SCN4AP35499 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
SCN4AP35499 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
SCN4AP35499 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SCN4AP35499 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SCN4AP35499 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC17.49■□□□□ 0.39
SCN4AP35499 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.49■□□□□ 0.39
SCN4AP35499 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.49■□□□□ 0.39
SCN4AP35499 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SCN4AP35499 TEKT4P2-202ENST00000559466 1312 ntBASIC17.49■□□□□ 0.39
SCN4AP35499 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC17.49■□□□□ 0.39
SCN4AP35499 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC17.48■□□□□ 0.39
SCN4AP35499 SALL4P5-201ENST00000419001 1760 ntBASIC17.48■□□□□ 0.39
SCN4AP35499 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SCN4AP35499 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC17.48■□□□□ 0.39
SCN4AP35499 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
SCN4AP35499 AC084018.2-201ENST00000613093 2607 ntBASIC17.48■□□□□ 0.39
SCN4AP35499 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SCN4AP35499 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SCN4AP35499 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SCN4AP35499 AC022211.2-201ENST00000585075 2527 ntBASIC17.48■□□□□ 0.39
SCN4AP35499 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SCN4AP35499 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
SCN4AP35499 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
SCN4AP35499 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
SCN4AP35499 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC17.48■□□□□ 0.39
SCN4AP35499 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC17.48■□□□□ 0.39
SCN4AP35499 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SCN4AP35499 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC17.48■□□□□ 0.39
SCN4AP35499 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
SCN4AP35499 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC17.48■□□□□ 0.39
SCN4AP35499 AC004686.1-201ENST00000605113 538 ntBASIC17.48■□□□□ 0.39
SCN4AP35499 TP53-221ENST00000615910 1149 ntTSL 5 BASIC17.48■□□□□ 0.39
SCN4AP35499 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
SCN4AP35499 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.48■□□□□ 0.39
SCN4AP35499 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SCN4AP35499 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC17.48■□□□□ 0.39
SCN4AP35499 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SCN4AP35499 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SCN4AP35499 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SCN4AP35499 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.48■□□□□ 0.39
SCN4AP35499 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SCN4AP35499 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC17.47■□□□□ 0.39
SCN4AP35499 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SCN4AP35499 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC17.47■□□□□ 0.39
SCN4AP35499 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
SCN4AP35499 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC17.47■□□□□ 0.39
SCN4AP35499 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SCN4AP35499 PYY2-201ENST00000315776 282 ntBASIC17.47■□□□□ 0.39
SCN4AP35499 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC17.47■□□□□ 0.39
SCN4AP35499 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 129.7 ms