Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 CETN4P-206ENST00000642099 2168 ntBASIC11.72□□□□□ -0.53
HLA-DMBP28068 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DMBP28068 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DMBP28068 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DMBP28068 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DMBP28068 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DMBP28068 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC11.72□□□□□ -0.53
HLA-DMBP28068 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DMBP28068 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DMBP28068 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
HLA-DMBP28068 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
HLA-DMBP28068 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DMBP28068 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
HLA-DMBP28068 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
HLA-DMBP28068 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC11.71□□□□□ -0.53
HLA-DMBP28068 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC11.71□□□□□ -0.53
HLA-DMBP28068 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DMBP28068 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DMBP28068 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DMBP28068 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DMBP28068 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DMBP28068 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DMBP28068 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
HLA-DMBP28068 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DMBP28068 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DMBP28068 DEK-201ENST00000244776 1441 ntTSL 2 BASIC11.71□□□□□ -0.53
HLA-DMBP28068 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DMBP28068 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DMBP28068 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
HLA-DMBP28068 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC11.71□□□□□ -0.53
HLA-DMBP28068 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DMBP28068 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DMBP28068 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC11.71□□□□□ -0.53
HLA-DMBP28068 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DMBP28068 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC11.71□□□□□ -0.53
HLA-DMBP28068 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DMBP28068 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DMBP28068 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DMBP28068 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DMBP28068 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
HLA-DMBP28068 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC11.71□□□□□ -0.53
HLA-DMBP28068 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DMBP28068 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DMBP28068 CENPM-205ENST00000404067 905 ntTSL 3 BASIC11.71□□□□□ -0.53
HLA-DMBP28068 RPL37AP1-201ENST00000412502 279 ntBASIC11.71□□□□□ -0.53
HLA-DMBP28068 RAD18-204ENST00000418463 563 ntTSL 4 BASIC11.71□□□□□ -0.53
HLA-DMBP28068 RAD18-205ENST00000421052 582 ntTSL 3 BASIC11.71□□□□□ -0.53
HLA-DMBP28068 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC11.71□□□□□ -0.53
HLA-DMBP28068 BASP1P1-201ENST00000430708 665 ntBASIC11.71□□□□□ -0.53
HLA-DMBP28068 AC055876.3-201ENST00000431496 288 ntBASIC11.71□□□□□ -0.53
HLA-DMBP28068 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC11.71□□□□□ -0.53
HLA-DMBP28068 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC11.71□□□□□ -0.53
HLA-DMBP28068 PPP6R2P1-201ENST00000450880 1275 ntBASIC11.71□□□□□ -0.53
HLA-DMBP28068 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC11.71□□□□□ -0.53
HLA-DMBP28068 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC11.71□□□□□ -0.53
HLA-DMBP28068 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC11.71□□□□□ -0.53
HLA-DMBP28068 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC11.71□□□□□ -0.53
HLA-DMBP28068 SPCS2P1-201ENST00000561636 679 ntBASIC11.71□□□□□ -0.53
HLA-DMBP28068 AC140878.1-201ENST00000565277 250 ntBASIC11.71□□□□□ -0.53
HLA-DMBP28068 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC11.71□□□□□ -0.53
HLA-DMBP28068 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC11.71□□□□□ -0.53
HLA-DMBP28068 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC11.71□□□□□ -0.53
HLA-DMBP28068 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
HLA-DMBP28068 AC025048.3-201ENST00000590609 569 ntBASIC11.71□□□□□ -0.53
HLA-DMBP28068 UBL5-208ENST00000593087 320 ntTSL 3 BASIC11.71□□□□□ -0.53
HLA-DMBP28068 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DMBP28068 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DMBP28068 AC138649.4-201ENST00000612222 287 ntBASIC11.71□□□□□ -0.53
HLA-DMBP28068 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC11.71□□□□□ -0.53
HLA-DMBP28068 AC005702.4-201ENST00000618393 416 ntBASIC11.71□□□□□ -0.53
HLA-DMBP28068 MIR6069-201ENST00000620069 79 ntBASIC11.71□□□□□ -0.53
HLA-DMBP28068 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DMBP28068 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DMBP28068 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
HLA-DMBP28068 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
HLA-DMBP28068 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC11.71□□□□□ -0.54
HLA-DMBP28068 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC11.71□□□□□ -0.54
HLA-DMBP28068 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
HLA-DMBP28068 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
HLA-DMBP28068 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
HLA-DMBP28068 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
HLA-DMBP28068 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
HLA-DMBP28068 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
HLA-DMBP28068 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
HLA-DMBP28068 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC11.71□□□□□ -0.54
HLA-DMBP28068 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.54
HLA-DMBP28068 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.54
HLA-DMBP28068 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC11.71□□□□□ -0.54
HLA-DMBP28068 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
HLA-DMBP28068 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
HLA-DMBP28068 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
HLA-DMBP28068 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
HLA-DMBP28068 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DMBP28068 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC11.7□□□□□ -0.54
HLA-DMBP28068 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC11.7□□□□□ -0.54
HLA-DMBP28068 LINC01230-201ENST00000625222 3017 ntBASIC11.7□□□□□ -0.54
HLA-DMBP28068 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DMBP28068 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DMBP28068 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DMBP28068 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC11.7□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms