Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
BDNFP23560 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC16.07■□□□□ 0.16
BDNFP23560 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC16.07■□□□□ 0.16
BDNFP23560 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC16.07■□□□□ 0.16
BDNFP23560 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC16.07■□□□□ 0.16
BDNFP23560 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC16.07■□□□□ 0.16
BDNFP23560 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
BDNFP23560 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC16.07■□□□□ 0.16
BDNFP23560 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC16.07■□□□□ 0.16
BDNFP23560 ENPP7P14-201ENST00000621765 1040 ntBASIC16.07■□□□□ 0.16
BDNFP23560 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
BDNFP23560 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
BDNFP23560 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
BDNFP23560 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
BDNFP23560 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
BDNFP23560 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
BDNFP23560 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
BDNFP23560 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
BDNFP23560 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC16.07■□□□□ 0.16
BDNFP23560 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC16.07■□□□□ 0.16
BDNFP23560 AC073347.1-201ENST00000421633 2643 ntBASIC16.07■□□□□ 0.16
BDNFP23560 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
BDNFP23560 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
BDNFP23560 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
BDNFP23560 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
BDNFP23560 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
BDNFP23560 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
BDNFP23560 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
BDNFP23560 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
BDNFP23560 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
BDNFP23560 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC16.06■□□□□ 0.16
BDNFP23560 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC16.06■□□□□ 0.16
BDNFP23560 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
BDNFP23560 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
BDNFP23560 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.06■□□□□ 0.16
BDNFP23560 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
BDNFP23560 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
BDNFP23560 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
BDNFP23560 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.06■□□□□ 0.16
BDNFP23560 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
BDNFP23560 AC103702.1-201ENST00000548801 2630 ntBASIC16.06■□□□□ 0.16
BDNFP23560 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC16.06■□□□□ 0.16
BDNFP23560 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
BDNFP23560 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
BDNFP23560 AP000845.1-201ENST00000581677 2131 ntBASIC16.06■□□□□ 0.16
BDNFP23560 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
BDNFP23560 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
BDNFP23560 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
BDNFP23560 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
BDNFP23560 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
BDNFP23560 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
BDNFP23560 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC16.06■□□□□ 0.16
BDNFP23560 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
BDNFP23560 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
BDNFP23560 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
BDNFP23560 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
BDNFP23560 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
BDNFP23560 MIR1202-201ENST00000408529 83 ntBASIC16.06■□□□□ 0.16
BDNFP23560 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
BDNFP23560 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
BDNFP23560 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
BDNFP23560 FAM21FP-201ENST00000426241 1131 ntBASIC16.06■□□□□ 0.16
BDNFP23560 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
BDNFP23560 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC16.06■□□□□ 0.16
BDNFP23560 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
BDNFP23560 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
BDNFP23560 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC16.06■□□□□ 0.16
BDNFP23560 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC16.06■□□□□ 0.16
BDNFP23560 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC16.06■□□□□ 0.16
BDNFP23560 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC16.06■□□□□ 0.16
BDNFP23560 AL583810.1-201ENST00000553344 1045 ntBASIC16.06■□□□□ 0.16
BDNFP23560 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
BDNFP23560 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
BDNFP23560 AC008687.7-202ENST00000637404 953 ntBASIC16.06■□□□□ 0.16
BDNFP23560 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
BDNFP23560 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
BDNFP23560 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC16.06■□□□□ 0.16
BDNFP23560 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
BDNFP23560 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC16.06■□□□□ 0.16
BDNFP23560 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
BDNFP23560 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
BDNFP23560 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
BDNFP23560 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.06■□□□□ 0.16
BDNFP23560 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
BDNFP23560 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
BDNFP23560 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.06■□□□□ 0.16
BDNFP23560 AL137783.1-201ENST00000623494 1896 ntBASIC16.05■□□□□ 0.16
BDNFP23560 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
BDNFP23560 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
BDNFP23560 AC138035.3-201ENST00000622706 2791 ntBASIC16.05■□□□□ 0.16
BDNFP23560 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
BDNFP23560 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
BDNFP23560 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC16.05■□□□□ 0.16
BDNFP23560 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
BDNFP23560 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
BDNFP23560 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
BDNFP23560 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
BDNFP23560 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
BDNFP23560 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC16.05■□□□□ 0.16
BDNFP23560 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms