Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 SPIB-207ENST00000597855 564 ntTSL 4 BASIC14.03□□□□□ -0.16
CLN6Q9NWW5 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC14.03□□□□□ -0.16
CLN6Q9NWW5 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLN6Q9NWW5 AL513190.1-201ENST00000621254 727 ntBASIC14.03□□□□□ -0.16
CLN6Q9NWW5 SERF2-217ENST00000630046 862 ntTSL 5 BASIC14.03□□□□□ -0.16
CLN6Q9NWW5 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLN6Q9NWW5 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
CLN6Q9NWW5 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CLN6Q9NWW5 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC14.03□□□□□ -0.16
CLN6Q9NWW5 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLN6Q9NWW5 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLN6Q9NWW5 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC14.03□□□□□ -0.16
CLN6Q9NWW5 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLN6Q9NWW5 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CLN6Q9NWW5 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC14.03□□□□□ -0.16
CLN6Q9NWW5 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLN6Q9NWW5 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLN6Q9NWW5 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
CLN6Q9NWW5 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CLN6Q9NWW5 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CLN6Q9NWW5 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
CLN6Q9NWW5 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLN6Q9NWW5 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CLN6Q9NWW5 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLN6Q9NWW5 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC14.02□□□□□ -0.16
CLN6Q9NWW5 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLN6Q9NWW5 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLN6Q9NWW5 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLN6Q9NWW5 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLN6Q9NWW5 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC14.02□□□□□ -0.16
CLN6Q9NWW5 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
CLN6Q9NWW5 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CLN6Q9NWW5 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC14.02□□□□□ -0.16
CLN6Q9NWW5 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLN6Q9NWW5 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLN6Q9NWW5 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC14.02□□□□□ -0.16
CLN6Q9NWW5 AC012508.2-201ENST00000567613 1472 ntBASIC14.02□□□□□ -0.16
CLN6Q9NWW5 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
CLN6Q9NWW5 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC14.02□□□□□ -0.16
CLN6Q9NWW5 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC14.02□□□□□ -0.17
CLN6Q9NWW5 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC14.02□□□□□ -0.17
CLN6Q9NWW5 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC14.02□□□□□ -0.17
CLN6Q9NWW5 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLN6Q9NWW5 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLN6Q9NWW5 KLK8-202ENST00000320838 456 ntTSL 5 BASIC14.02□□□□□ -0.17
CLN6Q9NWW5 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CLN6Q9NWW5 HLA-H-201ENST00000383620 1096 ntBASIC14.02□□□□□ -0.17
CLN6Q9NWW5 LBH-204ENST00000406087 559 ntTSL 4 BASIC14.02□□□□□ -0.17
CLN6Q9NWW5 AL355306.1-201ENST00000415580 579 ntBASIC14.02□□□□□ -0.17
CLN6Q9NWW5 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC14.02□□□□□ -0.17
CLN6Q9NWW5 INO80E-210ENST00000567705 880 ntTSL 3 BASIC14.02□□□□□ -0.17
CLN6Q9NWW5 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLN6Q9NWW5 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC14.02□□□□□ -0.17
CLN6Q9NWW5 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
CLN6Q9NWW5 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
CLN6Q9NWW5 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLN6Q9NWW5 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC14.02□□□□□ -0.17
CLN6Q9NWW5 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
CLN6Q9NWW5 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLN6Q9NWW5 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLN6Q9NWW5 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CLN6Q9NWW5 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC14.02□□□□□ -0.17
CLN6Q9NWW5 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLN6Q9NWW5 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.17
CLN6Q9NWW5 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLN6Q9NWW5 AC152010.1-201ENST00000415779 2006 ntBASIC14.02□□□□□ -0.17
CLN6Q9NWW5 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
CLN6Q9NWW5 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.17
CLN6Q9NWW5 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLN6Q9NWW5 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLN6Q9NWW5 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLN6Q9NWW5 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLN6Q9NWW5 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLN6Q9NWW5 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLN6Q9NWW5 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLN6Q9NWW5 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLN6Q9NWW5 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLN6Q9NWW5 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLN6Q9NWW5 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLN6Q9NWW5 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLN6Q9NWW5 AC138969.3-201ENST00000546612 1459 ntBASIC14.01□□□□□ -0.17
CLN6Q9NWW5 AC138932.2-201ENST00000548268 1459 ntBASIC14.01□□□□□ -0.17
CLN6Q9NWW5 AC126755.4-201ENST00000549796 1459 ntBASIC14.01□□□□□ -0.17
CLN6Q9NWW5 AC015802.1-201ENST00000588104 1449 ntBASIC14.01□□□□□ -0.17
CLN6Q9NWW5 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLN6Q9NWW5 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLN6Q9NWW5 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLN6Q9NWW5 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC14.01□□□□□ -0.17
CLN6Q9NWW5 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLN6Q9NWW5 TFAMP1-201ENST00000412727 736 ntBASIC14.01□□□□□ -0.17
CLN6Q9NWW5 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC14.01□□□□□ -0.17
CLN6Q9NWW5 AL671277.1-201ENST00000429656 993 ntBASIC14.01□□□□□ -0.17
CLN6Q9NWW5 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
CLN6Q9NWW5 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLN6Q9NWW5 FAM86C2P-203ENST00000528684 1004 ntBASIC14.01□□□□□ -0.17
CLN6Q9NWW5 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLN6Q9NWW5 NAA38-207ENST00000576861 556 ntTSL 3 BASIC14.01□□□□□ -0.17
CLN6Q9NWW5 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC14.01□□□□□ -0.17
CLN6Q9NWW5 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC14.01□□□□□ -0.17
CLN6Q9NWW5 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms