Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC17.77■□□□□ 0.44
CCDC144BQ3MJ40 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC144BQ3MJ40 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.43
CCDC144BQ3MJ40 AC104581.4-201ENST00000623126 3052 ntBASIC17.77■□□□□ 0.43
CCDC144BQ3MJ40 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC144BQ3MJ40 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC144BQ3MJ40 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC144BQ3MJ40 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC17.77■□□□□ 0.43
CCDC144BQ3MJ40 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC144BQ3MJ40 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC144BQ3MJ40 AC005912.2-201ENST00000619492 2400 ntBASIC17.77■□□□□ 0.43
CCDC144BQ3MJ40 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC144BQ3MJ40 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC144BQ3MJ40 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC144BQ3MJ40 AC011477.6-201ENST00000604980 1927 ntBASIC17.76■□□□□ 0.43
CCDC144BQ3MJ40 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CCDC144BQ3MJ40 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC144BQ3MJ40 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC144BQ3MJ40 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC144BQ3MJ40 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC144BQ3MJ40 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC144BQ3MJ40 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC144BQ3MJ40 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC144BQ3MJ40 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC144BQ3MJ40 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
CCDC144BQ3MJ40 AC093433.1-201ENST00000458048 571 ntBASIC17.76■□□□□ 0.43
CCDC144BQ3MJ40 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC144BQ3MJ40 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC17.76■□□□□ 0.43
CCDC144BQ3MJ40 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
CCDC144BQ3MJ40 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC17.76■□□□□ 0.43
CCDC144BQ3MJ40 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC17.76■□□□□ 0.43
CCDC144BQ3MJ40 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC144BQ3MJ40 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC144BQ3MJ40 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
CCDC144BQ3MJ40 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC144BQ3MJ40 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
CCDC144BQ3MJ40 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC144BQ3MJ40 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC144BQ3MJ40 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC144BQ3MJ40 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC144BQ3MJ40 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC144BQ3MJ40 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 AC134312.5-201ENST00000568031 1313 ntBASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 AL607033.1-201ENST00000623900 1599 ntBASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 APOC3-202ENST00000375345 604 ntTSL 5 BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 AC012441.1-201ENST00000446669 685 ntBASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 AP001063.1-201ENST00000568332 529 ntBASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 AC097359.3-201ENST00000603982 1210 ntBASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 METTL26-214ENST00000614890 801 ntTSL 3 BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 MIR6787-201ENST00000616675 61 ntBASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 AL390755.1-201ENST00000623716 2027 ntBASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 AC232323.1-201ENST00000540724 2099 ntBASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 REXO1L5P-201ENST00000622260 2098 ntBASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC144BQ3MJ40 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 AC013726.1-201ENST00000563747 2285 ntBASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms