Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA1P55317 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
FOXA1P55317 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC14.81□□□□□ -0.04
FOXA1P55317 HNRNPA3P1-201ENST00000401429 1139 ntBASIC14.81□□□□□ -0.04
FOXA1P55317 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC14.81□□□□□ -0.04
FOXA1P55317 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC14.81□□□□□ -0.04
FOXA1P55317 AL589987.1-201ENST00000453380 819 ntBASIC14.81□□□□□ -0.04
FOXA1P55317 HNRNPA3P5-201ENST00000455201 833 ntBASIC14.81□□□□□ -0.04
FOXA1P55317 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC14.81□□□□□ -0.04
FOXA1P55317 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC14.81□□□□□ -0.04
FOXA1P55317 SPDYE18-201ENST00000510091 1050 ntBASIC14.81□□□□□ -0.04
FOXA1P55317 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC14.81□□□□□ -0.04
FOXA1P55317 ZNF890P-202ENST00000530367 1156 ntBASIC14.81□□□□□ -0.04
FOXA1P55317 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC14.81□□□□□ -0.04
FOXA1P55317 RPL28-205ENST00000558131 444 ntTSL 5 BASIC14.81□□□□□ -0.04
FOXA1P55317 AC025678.2-201ENST00000562061 970 ntBASIC14.81□□□□□ -0.04
FOXA1P55317 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
FOXA1P55317 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.81□□□□□ -0.04
FOXA1P55317 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.81□□□□□ -0.04
FOXA1P55317 AC093028.1-201ENST00000622998 982 ntBASIC14.81□□□□□ -0.04
FOXA1P55317 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA1P55317 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
FOXA1P55317 PCDHA3-202ENST00000532566 4594 ntBASIC14.81□□□□□ -0.04
FOXA1P55317 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA1P55317 AL360270.3-201ENST00000609118 1348 ntBASIC14.81□□□□□ -0.04
FOXA1P55317 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA1P55317 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA1P55317 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.81□□□□□ -0.04
FOXA1P55317 RDX-218ENST00000544551 4117 ntTSL 2 BASIC14.81□□□□□ -0.04
FOXA1P55317 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC14.81□□□□□ -0.04
FOXA1P55317 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA1P55317 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
FOXA1P55317 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA1P55317 AC005840.4-201ENST00000541242 2494 ntBASIC14.81□□□□□ -0.04
FOXA1P55317 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA1P55317 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC14.81□□□□□ -0.04
FOXA1P55317 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA1P55317 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC14.8□□□□□ -0.04
FOXA1P55317 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA1P55317 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
FOXA1P55317 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA1P55317 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC14.8□□□□□ -0.04
FOXA1P55317 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA1P55317 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA1P55317 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC14.8□□□□□ -0.04
FOXA1P55317 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC14.8□□□□□ -0.04
FOXA1P55317 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC14.8□□□□□ -0.04
FOXA1P55317 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA1P55317 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
FOXA1P55317 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA1P55317 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
FOXA1P55317 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC14.8□□□□□ -0.04
FOXA1P55317 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA1P55317 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
FOXA1P55317 KRT18P13-201ENST00000400056 1290 ntBASIC14.8□□□□□ -0.04
FOXA1P55317 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA1P55317 TSSK5P-201ENST00000423978 907 ntBASIC14.8□□□□□ -0.04
FOXA1P55317 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC14.8□□□□□ -0.04
FOXA1P55317 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC14.8□□□□□ -0.04
FOXA1P55317 AC114501.2-201ENST00000439631 535 ntBASIC14.8□□□□□ -0.04
FOXA1P55317 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC14.8□□□□□ -0.04
FOXA1P55317 GAPDHP40-201ENST00000505218 1006 ntBASIC14.8□□□□□ -0.04
FOXA1P55317 CALM1-205ENST00000553542 877 ntTSL 5 BASIC14.8□□□□□ -0.04
FOXA1P55317 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
FOXA1P55317 AC092337.1-201ENST00000568699 1129 ntBASIC14.8□□□□□ -0.04
FOXA1P55317 SSH2-210ENST00000582084 560 ntTSL 3 BASIC14.8□□□□□ -0.04
FOXA1P55317 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC14.8□□□□□ -0.04
FOXA1P55317 AL391069.4-201ENST00000609583 481 ntBASIC14.8□□□□□ -0.04
FOXA1P55317 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA1P55317 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC14.8□□□□□ -0.04
FOXA1P55317 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
FOXA1P55317 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA1P55317 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA1P55317 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
FOXA1P55317 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA1P55317 CLK3P2-201ENST00000427566 1453 ntBASIC14.8□□□□□ -0.04
FOXA1P55317 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA1P55317 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA1P55317 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA1P55317 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC14.8□□□□□ -0.04
FOXA1P55317 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA1P55317 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA1P55317 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA1P55317 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
FOXA1P55317 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA1P55317 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA1P55317 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC14.8□□□□□ -0.04
FOXA1P55317 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC14.8□□□□□ -0.04
FOXA1P55317 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC14.8□□□□□ -0.04
FOXA1P55317 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
FOXA1P55317 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC14.8□□□□□ -0.04
FOXA1P55317 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC14.8□□□□□ -0.04
FOXA1P55317 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA1P55317 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
FOXA1P55317 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
FOXA1P55317 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
FOXA1P55317 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC14.79□□□□□ -0.04
FOXA1P55317 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA1P55317 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA1P55317 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms