Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC18.03■□□□□ 0.48
HMGB1P09429 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC18.03■□□□□ 0.48
HMGB1P09429 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC18.03■□□□□ 0.48
HMGB1P09429 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB1P09429 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB1P09429 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
HMGB1P09429 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB1P09429 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB1P09429 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB1P09429 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB1P09429 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
HMGB1P09429 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB1P09429 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC18.02■□□□□ 0.48
HMGB1P09429 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC18.02■□□□□ 0.48
HMGB1P09429 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HMGB1P09429 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HMGB1P09429 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGB1P09429 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC18.02■□□□□ 0.48
HMGB1P09429 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HMGB1P09429 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HMGB1P09429 LINC02228-204ENST00000642115 2962 ntBASIC18.02■□□□□ 0.48
HMGB1P09429 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGB1P09429 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGB1P09429 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGB1P09429 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGB1P09429 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC18.02■□□□□ 0.48
HMGB1P09429 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGB1P09429 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGB1P09429 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HMGB1P09429 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGB1P09429 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HMGB1P09429 B9D1-203ENST00000395615 805 ntTSL 3 BASIC18.02■□□□□ 0.48
HMGB1P09429 AC236430.1-201ENST00000402231 743 ntBASIC18.02■□□□□ 0.48
HMGB1P09429 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC18.02■□□□□ 0.48
HMGB1P09429 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC18.02■□□□□ 0.48
HMGB1P09429 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC18.02■□□□□ 0.48
HMGB1P09429 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC18.02■□□□□ 0.48
HMGB1P09429 CDK4-206ENST00000549606 558 ntTSL 2 BASIC18.02■□□□□ 0.48
HMGB1P09429 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC18.02■□□□□ 0.48
HMGB1P09429 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGB1P09429 AL355385.1-201ENST00000606123 409 ntBASIC18.02■□□□□ 0.48
HMGB1P09429 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC18.02■□□□□ 0.48
HMGB1P09429 AL603764.1-201ENST00000636452 321 ntBASIC18.02■□□□□ 0.48
HMGB1P09429 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC18.02■□□□□ 0.48
HMGB1P09429 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC18.02■□□□□ 0.48
HMGB1P09429 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGB1P09429 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC18.02■□□□□ 0.47
HMGB1P09429 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC18.02■□□□□ 0.47
HMGB1P09429 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
HMGB1P09429 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
HMGB1P09429 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC18.02■□□□□ 0.47
HMGB1P09429 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
HMGB1P09429 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
HMGB1P09429 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
HMGB1P09429 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC18.01■□□□□ 0.47
HMGB1P09429 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB1P09429 FAM45BP-202ENST00000592932 1624 ntBASIC18.01■□□□□ 0.47
HMGB1P09429 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC18.01■□□□□ 0.47
HMGB1P09429 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB1P09429 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB1P09429 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB1P09429 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
HMGB1P09429 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
HMGB1P09429 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC18.01■□□□□ 0.47
HMGB1P09429 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB1P09429 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB1P09429 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC18.01■□□□□ 0.47
HMGB1P09429 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB1P09429 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
HMGB1P09429 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB1P09429 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB1P09429 KRT8P14-201ENST00000414254 1442 ntBASIC18.01■□□□□ 0.47
HMGB1P09429 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC18.01■□□□□ 0.47
HMGB1P09429 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC18.01■□□□□ 0.47
HMGB1P09429 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB1P09429 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB1P09429 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
HMGB1P09429 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB1P09429 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB1P09429 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB1P09429 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
HMGB1P09429 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC18.01■□□□□ 0.47
HMGB1P09429 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
HMGB1P09429 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC18.01■□□□□ 0.47
HMGB1P09429 GALT-202ENST00000450095 1280 ntTSL 2 BASIC18.01■□□□□ 0.47
HMGB1P09429 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC18.01■□□□□ 0.47
HMGB1P09429 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB1P09429 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC18.01■□□□□ 0.47
HMGB1P09429 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC18.01■□□□□ 0.47
HMGB1P09429 MIR4745-201ENST00000577608 62 ntBASIC18.01■□□□□ 0.47
HMGB1P09429 IFT20-206ENST00000578122 834 ntTSL 2 BASIC18.01■□□□□ 0.47
HMGB1P09429 IFT20-208ENST00000578985 831 ntTSL 3 BASIC18.01■□□□□ 0.47
HMGB1P09429 SPDYE22P-201ENST00000582158 798 ntBASIC18.01■□□□□ 0.47
HMGB1P09429 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC18.01■□□□□ 0.47
HMGB1P09429 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC18.01■□□□□ 0.47
HMGB1P09429 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC18.01■□□□□ 0.47
HMGB1P09429 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB1P09429 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC18.01■□□□□ 0.47
HMGB1P09429 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB1P09429 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms