Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
CKS1BP61024 AC009093.1-201ENST00000566070 2099 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
CKS1BP61024 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
CKS1BP61024 LAMB2-201ENST00000305544 5643 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
CKS1BP61024 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
CKS1BP61024 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
CKS1BP61024 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC10.86□□□□□ -0.67
CKS1BP61024 ZNF148-205ENST00000484491 2952 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
CKS1BP61024 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
CKS1BP61024 PLCD4-202ENST00000417849 2738 ntAPPRIS P2 TSL 5 BASIC10.86□□□□□ -0.67
CKS1BP61024 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC10.85□□□□□ -0.67
CKS1BP61024 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC10.85□□□□□ -0.67
CKS1BP61024 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC10.85□□□□□ -0.67
CKS1BP61024 DPYSL5-207ENST00000614712 5128 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
CKS1BP61024 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC10.85□□□□□ -0.67
CKS1BP61024 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
CKS1BP61024 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC10.85□□□□□ -0.67
CKS1BP61024 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC10.85□□□□□ -0.67
CKS1BP61024 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
CKS1BP61024 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
CKS1BP61024 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC10.85□□□□□ -0.67
CKS1BP61024 AC087481.3-201ENST00000602886 1894 ntBASIC10.85□□□□□ -0.67
CKS1BP61024 OR2I1P-208ENST00000641137 4948 ntBASIC10.85□□□□□ -0.67
CKS1BP61024 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
CKS1BP61024 ACIN1-202ENST00000338631 2445 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
CKS1BP61024 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
CKS1BP61024 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
CKS1BP61024 UGT3A1-201ENST00000274278 5122 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
CKS1BP61024 GALC-201ENST00000261304 3883 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
CKS1BP61024 COL18A1-AS1-201ENST00000397787 3425 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
CKS1BP61024 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC10.85□□□□□ -0.67
CKS1BP61024 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
CKS1BP61024 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC10.85□□□□□ -0.67
CKS1BP61024 DFFB-203ENST00000341385 572 ntTSL 5 BASIC10.85□□□□□ -0.67
CKS1BP61024 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC10.85□□□□□ -0.67
CKS1BP61024 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC10.85□□□□□ -0.67
CKS1BP61024 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC10.85□□□□□ -0.67
CKS1BP61024 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC10.85□□□□□ -0.67
CKS1BP61024 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC10.85□□□□□ -0.67
CKS1BP61024 MRPL20P1-201ENST00000400819 433 ntBASIC10.85□□□□□ -0.67
CKS1BP61024 KRT18P31-201ENST00000506277 1292 ntBASIC10.85□□□□□ -0.67
CKS1BP61024 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
CKS1BP61024 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC10.85□□□□□ -0.67
CKS1BP61024 AC107918.4-202ENST00000641623 219 ntBASIC10.85□□□□□ -0.67
CKS1BP61024 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
CKS1BP61024 LPO-204ENST00000543544 2350 ntTSL 2 BASIC10.85□□□□□ -0.67
CKS1BP61024 AC019294.4-201ENST00000561777 2905 ntBASIC10.85□□□□□ -0.67
CKS1BP61024 KREMEN1-202ENST00000400335 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
CKS1BP61024 DOT1L-201ENST00000398665 7436 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
CKS1BP61024 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC10.85□□□□□ -0.67
CKS1BP61024 AC040174.1-201ENST00000563003 2571 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
CKS1BP61024 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
CKS1BP61024 NAPEPLD-201ENST00000341533 4972 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
CKS1BP61024 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC10.85□□□□□ -0.67
CKS1BP61024 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC10.85□□□□□ -0.67
CKS1BP61024 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC10.85□□□□□ -0.67
CKS1BP61024 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC10.85□□□□□ -0.67
CKS1BP61024 DHX38-201ENST00000268482 4608 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
CKS1BP61024 VSTM2A-201ENST00000302287 3401 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
CKS1BP61024 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC10.85□□□□□ -0.67
CKS1BP61024 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
CKS1BP61024 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC10.85□□□□□ -0.67
CKS1BP61024 CENPP-203ENST00000375587 8766 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
CKS1BP61024 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
CKS1BP61024 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC10.85□□□□□ -0.67
CKS1BP61024 SPG11-202ENST00000427534 6935 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
CKS1BP61024 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC10.85□□□□□ -0.67
CKS1BP61024 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC10.85□□□□□ -0.67
CKS1BP61024 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC10.84□□□□□ -0.67
CKS1BP61024 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CKS1BP61024 CIPC-201ENST00000361786 4486 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CKS1BP61024 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CKS1BP61024 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
CKS1BP61024 ATL2-204ENST00000406122 2864 ntTSL 5 BASIC10.84□□□□□ -0.67
CKS1BP61024 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC10.84□□□□□ -0.67
CKS1BP61024 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC10.84□□□□□ -0.67
CKS1BP61024 TRPM5-203ENST00000533060 3562 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
CKS1BP61024 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC10.84□□□□□ -0.67
CKS1BP61024 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
CKS1BP61024 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC10.84□□□□□ -0.67
CKS1BP61024 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
CKS1BP61024 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CKS1BP61024 CCDC88C-201ENST00000331194 3104 ntTSL 5 BASIC10.84□□□□□ -0.67
CKS1BP61024 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CKS1BP61024 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CKS1BP61024 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC10.84□□□□□ -0.67
CKS1BP61024 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CKS1BP61024 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CKS1BP61024 INIP-202ENST00000374236 874 ntTSL 2 BASIC10.84□□□□□ -0.67
CKS1BP61024 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC10.84□□□□□ -0.67
CKS1BP61024 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC10.84□□□□□ -0.67
CKS1BP61024 PMS2P4-201ENST00000412466 1052 ntBASIC10.84□□□□□ -0.67
CKS1BP61024 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC10.84□□□□□ -0.67
CKS1BP61024 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC10.84□□□□□ -0.67
CKS1BP61024 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC10.84□□□□□ -0.67
CKS1BP61024 AC073648.2-201ENST00000510116 352 ntBASIC10.84□□□□□ -0.67
CKS1BP61024 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC10.84□□□□□ -0.67
CKS1BP61024 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC10.84□□□□□ -0.67
CKS1BP61024 OR7E14P-202ENST00000530490 1290 ntBASIC10.84□□□□□ -0.67
CKS1BP61024 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms