Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CDX1P47902 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC12.62□□□□□ -0.39
CDX1P47902 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC12.62□□□□□ -0.39
CDX1P47902 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
CDX1P47902 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC12.62□□□□□ -0.39
CDX1P47902 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CDX1P47902 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
CDX1P47902 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
CDX1P47902 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
CDX1P47902 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
CDX1P47902 ADAMTS7P1-201ENST00000613213 4793 ntBASIC12.62□□□□□ -0.39
CDX1P47902 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
CDX1P47902 DLG4-203ENST00000399510 3975 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CDX1P47902 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CDX1P47902 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CDX1P47902 AC136759.1-202ENST00000530858 2194 ntBASIC12.62□□□□□ -0.39
CDX1P47902 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CDX1P47902 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
CDX1P47902 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC12.62□□□□□ -0.39
CDX1P47902 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
CDX1P47902 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC12.62□□□□□ -0.39
CDX1P47902 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CDX1P47902 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CDX1P47902 CENPM-205ENST00000404067 905 ntTSL 3 BASIC12.62□□□□□ -0.39
CDX1P47902 FAM8A3P-201ENST00000427218 844 ntBASIC12.62□□□□□ -0.39
CDX1P47902 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CDX1P47902 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC12.62□□□□□ -0.39
CDX1P47902 HLA-V-204ENST00000476601 1289 ntBASIC12.62□□□□□ -0.39
CDX1P47902 LY6E-204ENST00000519546 971 ntTSL 2 BASIC12.62□□□□□ -0.39
CDX1P47902 AC027369.6-201ENST00000525520 931 ntBASIC12.62□□□□□ -0.39
CDX1P47902 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC12.62□□□□□ -0.39
CDX1P47902 AC105021.1-202ENST00000570572 669 ntBASIC12.62□□□□□ -0.39
CDX1P47902 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC12.62□□□□□ -0.39
CDX1P47902 AC061975.2-201ENST00000581722 295 ntBASIC12.62□□□□□ -0.39
CDX1P47902 INO80C-206ENST00000586489 594 ntTSL 3 BASIC12.62□□□□□ -0.39
CDX1P47902 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CDX1P47902 RN7SL828P-201ENST00000607615 303 ntBASIC12.62□□□□□ -0.39
CDX1P47902 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC12.62□□□□□ -0.39
CDX1P47902 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
CDX1P47902 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
CDX1P47902 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CDX1P47902 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CDX1P47902 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC12.62□□□□□ -0.39
CDX1P47902 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CDX1P47902 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
CDX1P47902 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC12.62□□□□□ -0.39
CDX1P47902 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC12.62□□□□□ -0.39
CDX1P47902 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
CDX1P47902 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC12.62□□□□□ -0.39
CDX1P47902 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CDX1P47902 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CDX1P47902 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC12.62□□□□□ -0.39
CDX1P47902 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CDX1P47902 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CDX1P47902 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC12.62□□□□□ -0.39
CDX1P47902 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC12.62□□□□□ -0.39
CDX1P47902 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
CDX1P47902 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
CDX1P47902 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC12.61□□□□□ -0.39
CDX1P47902 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
CDX1P47902 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CDX1P47902 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CDX1P47902 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC12.61□□□□□ -0.39
CDX1P47902 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CDX1P47902 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CDX1P47902 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
CDX1P47902 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CDX1P47902 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CDX1P47902 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC12.61□□□□□ -0.39
CDX1P47902 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CDX1P47902 AC005562.1-201ENST00000583030 3219 ntBASIC12.61□□□□□ -0.39
CDX1P47902 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC12.61□□□□□ -0.39
CDX1P47902 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC12.61□□□□□ -0.39
CDX1P47902 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CDX1P47902 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
CDX1P47902 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CDX1P47902 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CDX1P47902 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CDX1P47902 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC12.61□□□□□ -0.39
CDX1P47902 HNRNPA1P40-201ENST00000426371 1278 ntBASIC12.61□□□□□ -0.39
CDX1P47902 AC241585.1-201ENST00000433527 519 ntBASIC12.61□□□□□ -0.39
CDX1P47902 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC12.61□□□□□ -0.39
CDX1P47902 BCRP1-201ENST00000444246 691 ntBASIC12.61□□□□□ -0.39
CDX1P47902 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC12.61□□□□□ -0.39
CDX1P47902 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC12.61□□□□□ -0.39
CDX1P47902 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC12.61□□□□□ -0.39
CDX1P47902 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC12.61□□□□□ -0.39
CDX1P47902 MIR3197-201ENST00000582241 73 ntBASIC12.61□□□□□ -0.39
CDX1P47902 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC12.61□□□□□ -0.39
CDX1P47902 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC12.61□□□□□ -0.39
CDX1P47902 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CDX1P47902 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
CDX1P47902 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CDX1P47902 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CDX1P47902 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CDX1P47902 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
CDX1P47902 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC12.61□□□□□ -0.39
CDX1P47902 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
CDX1P47902 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
CDX1P47902 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms