Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIME1Q9H400 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC20.28■□□□□ 0.84
LIME1Q9H400 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC20.27■□□□□ 0.84
LIME1Q9H400 MED17-227ENST00000640521 2047 ntTSL 5 BASIC20.27■□□□□ 0.84
LIME1Q9H400 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIME1Q9H400 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC20.27■□□□□ 0.84
LIME1Q9H400 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC20.27■□□□□ 0.84
LIME1Q9H400 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIME1Q9H400 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIME1Q9H400 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
LIME1Q9H400 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
LIME1Q9H400 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC20.26■□□□□ 0.83
LIME1Q9H400 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
LIME1Q9H400 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.26■□□□□ 0.83
LIME1Q9H400 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.26■□□□□ 0.83
LIME1Q9H400 AC142381.2-201ENST00000566120 298 ntBASIC20.26■□□□□ 0.83
LIME1Q9H400 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LIME1Q9H400 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIME1Q9H400 AC106739.1-201ENST00000617035 715 ntBASIC20.26■□□□□ 0.83
LIME1Q9H400 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LIME1Q9H400 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LIME1Q9H400 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIME1Q9H400 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC20.25■□□□□ 0.83
LIME1Q9H400 AC026271.2-201ENST00000428091 497 ntBASIC20.25■□□□□ 0.83
LIME1Q9H400 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
LIME1Q9H400 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
LIME1Q9H400 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIME1Q9H400 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIME1Q9H400 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIME1Q9H400 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIME1Q9H400 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LIME1Q9H400 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
LIME1Q9H400 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
LIME1Q9H400 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
LIME1Q9H400 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LIME1Q9H400 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LIME1Q9H400 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LIME1Q9H400 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.24■□□□□ 0.83
LIME1Q9H400 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.24■□□□□ 0.83
LIME1Q9H400 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.24■□□□□ 0.83
LIME1Q9H400 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
LIME1Q9H400 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LIME1Q9H400 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LIME1Q9H400 AC142381.3-201ENST00000568208 1670 ntBASIC20.23■□□□□ 0.83
LIME1Q9H400 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LIME1Q9H400 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.23■□□□□ 0.83
LIME1Q9H400 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.23■□□□□ 0.83
LIME1Q9H400 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.23■□□□□ 0.83
LIME1Q9H400 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LIME1Q9H400 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
LIME1Q9H400 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LIME1Q9H400 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LIME1Q9H400 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
LIME1Q9H400 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LIME1Q9H400 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.22■□□□□ 0.83
LIME1Q9H400 AC011551.1-201ENST00000614101 683 ntBASIC20.22■□□□□ 0.83
LIME1Q9H400 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC20.22■□□□□ 0.83
LIME1Q9H400 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC20.22■□□□□ 0.83
LIME1Q9H400 THRA-202ENST00000394121 2260 ntTSL 2 BASIC20.22■□□□□ 0.83
LIME1Q9H400 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LIME1Q9H400 AC138932.3-201ENST00000567634 1902 ntBASIC20.21■□□□□ 0.83
LIME1Q9H400 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC20.21■□□□□ 0.83
LIME1Q9H400 AC022211.4-201ENST00000625094 2161 ntBASIC20.21■□□□□ 0.83
LIME1Q9H400 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
LIME1Q9H400 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
LIME1Q9H400 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
LIME1Q9H400 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
LIME1Q9H400 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIME1Q9H400 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LIME1Q9H400 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
LIME1Q9H400 UNC93B3-201ENST00000308076 687 ntBASIC20.2■□□□□ 0.82
LIME1Q9H400 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LIME1Q9H400 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
LIME1Q9H400 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LIME1Q9H400 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC20.2■□□□□ 0.82
LIME1Q9H400 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.2■□□□□ 0.82
LIME1Q9H400 AC096887.2-201ENST00000623443 1957 ntBASIC20.2■□□□□ 0.82
LIME1Q9H400 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIME1Q9H400 AC135279.3-201ENST00000610945 1311 ntBASIC20.2■□□□□ 0.82
LIME1Q9H400 AF131216.4-201ENST00000638924 1588 ntBASIC20.2■□□□□ 0.82
LIME1Q9H400 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
LIME1Q9H400 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIME1Q9H400 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LIME1Q9H400 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIME1Q9H400 PREB-202ENST00000406567 1910 ntTSL 5 BASIC20.19■□□□□ 0.82
LIME1Q9H400 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.19■□□□□ 0.82
LIME1Q9H400 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIME1Q9H400 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.19■□□□□ 0.82
LIME1Q9H400 LGR4-203ENST00000480977 492 ntTSL 2 BASIC20.19■□□□□ 0.82
LIME1Q9H400 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.19■□□□□ 0.82
LIME1Q9H400 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC20.19■□□□□ 0.82
LIME1Q9H400 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC20.19■□□□□ 0.82
LIME1Q9H400 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LIME1Q9H400 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIME1Q9H400 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIME1Q9H400 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIME1Q9H400 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIME1Q9H400 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
LIME1Q9H400 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LIME1Q9H400 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms