Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC58Q4VC31 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
CCDC58Q4VC31 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC20.52■□□□□ 0.88
CCDC58Q4VC31 C9orf163-202ENST00000624034 2573 ntBASIC20.52■□□□□ 0.88
CCDC58Q4VC31 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC58Q4VC31 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC58Q4VC31 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC58Q4VC31 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
CCDC58Q4VC31 REST-210ENST00000638187 1334 ntTSL 5 BASIC20.52■□□□□ 0.87
CCDC58Q4VC31 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.51■□□□□ 0.87
CCDC58Q4VC31 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC58Q4VC31 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
CCDC58Q4VC31 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
CCDC58Q4VC31 KRT18P10-201ENST00000388836 1287 ntBASIC20.51■□□□□ 0.87
CCDC58Q4VC31 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC58Q4VC31 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC58Q4VC31 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC58Q4VC31 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
CCDC58Q4VC31 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CCDC58Q4VC31 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.5■□□□□ 0.87
CCDC58Q4VC31 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.5■□□□□ 0.87
CCDC58Q4VC31 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC58Q4VC31 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC58Q4VC31 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC58Q4VC31 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC58Q4VC31 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC20.5■□□□□ 0.87
CCDC58Q4VC31 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC20.5■□□□□ 0.87
CCDC58Q4VC31 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.49■□□□□ 0.87
CCDC58Q4VC31 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC58Q4VC31 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC58Q4VC31 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC58Q4VC31 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.49■□□□□ 0.87
CCDC58Q4VC31 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC58Q4VC31 AL121603.2-201ENST00000557373 2117 ntBASIC20.48■□□□□ 0.87
CCDC58Q4VC31 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC58Q4VC31 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC58Q4VC31 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC58Q4VC31 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC58Q4VC31 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC58Q4VC31 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.48■□□□□ 0.87
CCDC58Q4VC31 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC58Q4VC31 AC092296.2-201ENST00000589470 999 ntBASIC20.48■□□□□ 0.87
CCDC58Q4VC31 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC58Q4VC31 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.48■□□□□ 0.87
CCDC58Q4VC31 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC58Q4VC31 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC58Q4VC31 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.47■□□□□ 0.87
CCDC58Q4VC31 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC58Q4VC31 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC20.47■□□□□ 0.87
CCDC58Q4VC31 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC58Q4VC31 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC58Q4VC31 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC58Q4VC31 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC58Q4VC31 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
CCDC58Q4VC31 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC20.47■□□□□ 0.87
CCDC58Q4VC31 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC58Q4VC31 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
CCDC58Q4VC31 AC016575.1-201ENST00000607026 382 ntBASIC20.47■□□□□ 0.87
CCDC58Q4VC31 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC58Q4VC31 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC58Q4VC31 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.47■□□□□ 0.87
CCDC58Q4VC31 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.47■□□□□ 0.87
CCDC58Q4VC31 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC58Q4VC31 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.46■□□□□ 0.87
CCDC58Q4VC31 RNF165-205ENST00000588679 2904 ntBASIC20.46■□□□□ 0.87
CCDC58Q4VC31 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC58Q4VC31 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC58Q4VC31 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC58Q4VC31 RP9P-202ENST00000450133 1212 ntBASIC20.46■□□□□ 0.87
CCDC58Q4VC31 FOXO3B-201ENST00000395675 1928 ntBASIC20.46■□□□□ 0.87
CCDC58Q4VC31 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC58Q4VC31 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC58Q4VC31 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC58Q4VC31 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC58Q4VC31 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC58Q4VC31 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC58Q4VC31 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC58Q4VC31 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.45■□□□□ 0.86
CCDC58Q4VC31 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC58Q4VC31 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC58Q4VC31 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC20.45■□□□□ 0.86
CCDC58Q4VC31 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC58Q4VC31 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC58Q4VC31 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
CCDC58Q4VC31 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC58Q4VC31 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC58Q4VC31 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC20.44■□□□□ 0.86
CCDC58Q4VC31 ABHD17AP4-201ENST00000411545 909 ntBASIC20.44■□□□□ 0.86
CCDC58Q4VC31 ECEL1P2-201ENST00000461596 1295 ntBASIC20.44■□□□□ 0.86
CCDC58Q4VC31 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC20.44■□□□□ 0.86
CCDC58Q4VC31 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC58Q4VC31 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.44■□□□□ 0.86
CCDC58Q4VC31 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC58Q4VC31 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
CCDC58Q4VC31 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.43■□□□□ 0.86
CCDC58Q4VC31 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC58Q4VC31 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
CCDC58Q4VC31 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC58Q4VC31 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC58Q4VC31 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 133.9 ms