Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDX1P47902 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CDX1P47902 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDX1P47902 BEX3-202ENST00000372634 753 ntTSL 2 BASIC18.62■□□□□ 0.57
CDX1P47902 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CDX1P47902 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDX1P47902 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDX1P47902 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CDX1P47902 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDX1P47902 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDX1P47902 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CDX1P47902 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC18.61■□□□□ 0.57
CDX1P47902 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDX1P47902 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDX1P47902 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC18.61■□□□□ 0.57
CDX1P47902 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CDX1P47902 YBX1P4-201ENST00000392794 808 ntBASIC18.61■□□□□ 0.57
CDX1P47902 USP48-205ENST00000421625 2818 ntTSL 2 BASIC18.61■□□□□ 0.57
CDX1P47902 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC18.61■□□□□ 0.57
CDX1P47902 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC18.6■□□□□ 0.57
CDX1P47902 MIR4508-201ENST00000584178 70 ntBASIC18.6■□□□□ 0.57
CDX1P47902 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CDX1P47902 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CDX1P47902 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC18.6■□□□□ 0.57
CDX1P47902 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDX1P47902 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CDX1P47902 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CDX1P47902 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDX1P47902 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC18.59■□□□□ 0.57
CDX1P47902 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDX1P47902 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDX1P47902 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDX1P47902 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC18.59■□□□□ 0.57
CDX1P47902 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC18.59■□□□□ 0.57
CDX1P47902 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDX1P47902 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDX1P47902 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC18.59■□□□□ 0.57
CDX1P47902 LONRF2P2-201ENST00000439212 571 ntBASIC18.59■□□□□ 0.57
CDX1P47902 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDX1P47902 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC18.59■□□□□ 0.57
CDX1P47902 PVT1_1.1-201ENST00000615125 194 ntBASIC18.59■□□□□ 0.57
CDX1P47902 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
CDX1P47902 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CDX1P47902 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDX1P47902 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDX1P47902 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
CDX1P47902 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDX1P47902 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CDX1P47902 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CDX1P47902 EFS-203ENST00000429593 2610 ntTSL 2 BASIC18.58■□□□□ 0.57
CDX1P47902 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CDX1P47902 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CDX1P47902 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
CDX1P47902 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CDX1P47902 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CDX1P47902 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC18.58■□□□□ 0.56
CDX1P47902 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CDX1P47902 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CDX1P47902 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CDX1P47902 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CDX1P47902 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CDX1P47902 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
CDX1P47902 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC18.57■□□□□ 0.56
CDX1P47902 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC18.57■□□□□ 0.56
CDX1P47902 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CDX1P47902 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
CDX1P47902 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDX1P47902 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC18.57■□□□□ 0.56
CDX1P47902 AL121603.2-201ENST00000557373 2117 ntBASIC18.57■□□□□ 0.56
CDX1P47902 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDX1P47902 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDX1P47902 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC18.57■□□□□ 0.56
CDX1P47902 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC18.57■□□□□ 0.56
CDX1P47902 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDX1P47902 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC18.57■□□□□ 0.56
CDX1P47902 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CDX1P47902 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
CDX1P47902 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CDX1P47902 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CDX1P47902 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC18.56■□□□□ 0.56
CDX1P47902 AC103834.1-201ENST00000520383 144 ntBASIC18.56■□□□□ 0.56
CDX1P47902 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CDX1P47902 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC18.56■□□□□ 0.56
CDX1P47902 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC18.56■□□□□ 0.56
CDX1P47902 KRT8P33-201ENST00000508125 1423 ntBASIC18.56■□□□□ 0.56
CDX1P47902 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDX1P47902 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDX1P47902 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC18.55■□□□□ 0.56
CDX1P47902 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC18.55■□□□□ 0.56
CDX1P47902 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDX1P47902 DUSP8P5-201ENST00000422884 1815 ntBASIC18.55■□□□□ 0.56
CDX1P47902 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDX1P47902 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CDX1P47902 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CDX1P47902 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CDX1P47902 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CDX1P47902 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CDX1P47902 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CDX1P47902 AC022616.5-201ENST00000518796 181 ntBASIC18.54■□□□□ 0.56
CDX1P47902 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms