Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 MIR769-201ENST00000390225 118 ntBASIC14.8□□□□□ -0.04
COL28A1Q2UY09 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 CYP46A4P-201ENST00000414953 267 ntBASIC14.8□□□□□ -0.04
COL28A1Q2UY09 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 PTPA-218ENST00000435132 618 ntTSL 2 BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 RPSAP36-202ENST00000494591 1261 ntBASIC14.8□□□□□ -0.04
COL28A1Q2UY09 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 Z97205.2-201ENST00000564697 1639 ntBASIC14.8□□□□□ -0.04
COL28A1Q2UY09 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 AC144831.1-201ENST00000573312 2656 ntBASIC14.79□□□□□ -0.04
COL28A1Q2UY09 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 SNX21-203ENST00000372541 771 ntTSL 2 BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 HOMER2P2-201ENST00000451621 847 ntBASIC14.79□□□□□ -0.04
COL28A1Q2UY09 AC245100.5-201ENST00000452108 331 ntBASIC14.79□□□□□ -0.04
COL28A1Q2UY09 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 IQSEC3P1-201ENST00000538799 536 ntBASIC14.79□□□□□ -0.04
COL28A1Q2UY09 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 MIR3907-201ENST00000579424 151 ntBASIC14.79□□□□□ -0.04
COL28A1Q2UY09 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 AP001505.2-201ENST00000616815 443 ntBASIC14.79□□□□□ -0.04
COL28A1Q2UY09 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL28A1Q2UY09 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 MIR648-201ENST00000385046 94 ntBASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms