Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH6P55285 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CDH6P55285 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH6P55285 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CDH6P55285 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH6P55285 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH6P55285 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH6P55285 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH6P55285 SPDYE19P-201ENST00000338590 713 ntBASIC15.98■□□□□ 0.15
CDH6P55285 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH6P55285 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC15.98■□□□□ 0.15
CDH6P55285 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH6P55285 TMPRSS11CP-201ENST00000453277 683 ntBASIC15.98■□□□□ 0.15
CDH6P55285 RHOA-206ENST00000454011 889 ntTSL 2 BASIC15.98■□□□□ 0.15
CDH6P55285 FAM86LP-201ENST00000478302 853 ntBASIC15.98■□□□□ 0.15
CDH6P55285 SAMD11P1-201ENST00000571429 661 ntBASIC15.98■□□□□ 0.15
CDH6P55285 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
CDH6P55285 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC15.98■□□□□ 0.15
CDH6P55285 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
CDH6P55285 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH6P55285 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CDH6P55285 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH6P55285 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH6P55285 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH6P55285 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
CDH6P55285 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
CDH6P55285 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC15.98■□□□□ 0.15
CDH6P55285 AC007686.3-201ENST00000619017 3487 ntBASIC15.98■□□□□ 0.15
CDH6P55285 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
CDH6P55285 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH6P55285 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH6P55285 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH6P55285 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC15.97■□□□□ 0.15
CDH6P55285 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH6P55285 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH6P55285 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
CDH6P55285 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
CDH6P55285 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH6P55285 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC15.97■□□□□ 0.15
CDH6P55285 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC15.97■□□□□ 0.15
CDH6P55285 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC15.97■□□□□ 0.15
CDH6P55285 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH6P55285 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC15.97■□□□□ 0.15
CDH6P55285 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH6P55285 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH6P55285 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CDH6P55285 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CDH6P55285 GNAQP1-201ENST00000444815 1067 ntBASIC15.97■□□□□ 0.15
CDH6P55285 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC15.97■□□□□ 0.15
CDH6P55285 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC15.97■□□□□ 0.15
CDH6P55285 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
CDH6P55285 INO80C-206ENST00000586489 594 ntTSL 3 BASIC15.97■□□□□ 0.15
CDH6P55285 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC15.97■□□□□ 0.15
CDH6P55285 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
CDH6P55285 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CDH6P55285 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC15.97■□□□□ 0.15
CDH6P55285 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
CDH6P55285 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CDH6P55285 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC15.97■□□□□ 0.15
CDH6P55285 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CDH6P55285 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH6P55285 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH6P55285 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
CDH6P55285 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC15.97■□□□□ 0.15
CDH6P55285 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC15.97■□□□□ 0.15
CDH6P55285 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH6P55285 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH6P55285 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CDH6P55285 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH6P55285 SLC9A7P1-202ENST00000556476 2239 ntBASIC15.96■□□□□ 0.15
CDH6P55285 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CDH6P55285 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDH6P55285 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC15.96■□□□□ 0.15
CDH6P55285 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
CDH6P55285 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDH6P55285 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CDH6P55285 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
CDH6P55285 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CDH6P55285 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDH6P55285 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC15.96■□□□□ 0.15
CDH6P55285 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CDH6P55285 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CDH6P55285 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
CDH6P55285 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC15.96■□□□□ 0.15
CDH6P55285 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDH6P55285 OSM-203ENST00000403463 464 ntTSL 3 BASIC15.96■□□□□ 0.15
CDH6P55285 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CDH6P55285 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC15.96■□□□□ 0.15
CDH6P55285 RN7SL399P-201ENST00000471648 279 ntBASIC15.96■□□□□ 0.15
CDH6P55285 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CDH6P55285 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDH6P55285 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC15.96■□□□□ 0.15
CDH6P55285 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC15.96■□□□□ 0.15
CDH6P55285 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC15.96■□□□□ 0.15
CDH6P55285 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC15.96■□□□□ 0.15
CDH6P55285 AL355385.1-201ENST00000606123 409 ntBASIC15.96■□□□□ 0.15
CDH6P55285 AC009118.2-201ENST00000613275 655 ntBASIC15.96■□□□□ 0.15
CDH6P55285 OR2I1P-210ENST00000642037 4691 ntBASIC15.96■□□□□ 0.15
CDH6P55285 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDH6P55285 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms