Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC13.58□□□□□ -0.24
SOX2P48431 KRT8P23-201ENST00000560090 1207 ntBASIC13.58□□□□□ -0.24
SOX2P48431 RARRES2P9-201ENST00000565168 469 ntBASIC13.58□□□□□ -0.24
SOX2P48431 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC13.58□□□□□ -0.24
SOX2P48431 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC13.58□□□□□ -0.24
SOX2P48431 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC13.58□□□□□ -0.24
SOX2P48431 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SOX2P48431 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC13.58□□□□□ -0.24
SOX2P48431 CAND2-206ENST00000626378 333 ntTSL 5 BASIC13.58□□□□□ -0.24
SOX2P48431 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SOX2P48431 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SOX2P48431 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SOX2P48431 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.24
SOX2P48431 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
SOX2P48431 AP000845.1-201ENST00000581677 2131 ntBASIC13.58□□□□□ -0.24
SOX2P48431 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SOX2P48431 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC13.58□□□□□ -0.24
SOX2P48431 AC131212.3-201ENST00000624087 4219 ntBASIC13.58□□□□□ -0.24
SOX2P48431 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SOX2P48431 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SOX2P48431 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC13.58□□□□□ -0.24
SOX2P48431 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
SOX2P48431 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
SOX2P48431 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SOX2P48431 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC13.58□□□□□ -0.24
SOX2P48431 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC13.58□□□□□ -0.24
SOX2P48431 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SOX2P48431 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SOX2P48431 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX2P48431 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX2P48431 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX2P48431 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC13.57□□□□□ -0.24
SOX2P48431 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC13.57□□□□□ -0.24
SOX2P48431 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX2P48431 GRN-214ENST00000589265 1632 ntTSL 5 BASIC13.57□□□□□ -0.24
SOX2P48431 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX2P48431 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
SOX2P48431 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX2P48431 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
SOX2P48431 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SOX2P48431 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX2P48431 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC13.57□□□□□ -0.24
SOX2P48431 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC13.57□□□□□ -0.24
SOX2P48431 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC13.57□□□□□ -0.24
SOX2P48431 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX2P48431 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX2P48431 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC13.57□□□□□ -0.24
SOX2P48431 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX2P48431 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX2P48431 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC13.57□□□□□ -0.24
SOX2P48431 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SOX2P48431 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX2P48431 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX2P48431 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX2P48431 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC13.57□□□□□ -0.24
SOX2P48431 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
SOX2P48431 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC13.57□□□□□ -0.24
SOX2P48431 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX2P48431 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC13.57□□□□□ -0.24
SOX2P48431 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC13.57□□□□□ -0.24
SOX2P48431 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC13.57□□□□□ -0.24
SOX2P48431 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC13.57□□□□□ -0.24
SOX2P48431 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC13.57□□□□□ -0.24
SOX2P48431 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC13.57□□□□□ -0.24
SOX2P48431 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC13.57□□□□□ -0.24
SOX2P48431 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC13.57□□□□□ -0.24
SOX2P48431 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC13.57□□□□□ -0.24
SOX2P48431 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX2P48431 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC13.57□□□□□ -0.24
SOX2P48431 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SOX2P48431 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SOX2P48431 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX2P48431 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC13.57□□□□□ -0.24
SOX2P48431 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SOX2P48431 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX2P48431 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC13.57□□□□□ -0.24
SOX2P48431 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
SOX2P48431 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX2P48431 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX2P48431 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
SOX2P48431 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC13.57□□□□□ -0.24
SOX2P48431 AC097359.2-201ENST00000604992 2389 ntBASIC13.57□□□□□ -0.24
SOX2P48431 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC13.57□□□□□ -0.24
SOX2P48431 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SOX2P48431 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
SOX2P48431 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SOX2P48431 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SOX2P48431 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC13.56□□□□□ -0.24
SOX2P48431 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SOX2P48431 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SOX2P48431 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SOX2P48431 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
SOX2P48431 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
SOX2P48431 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC13.56□□□□□ -0.24
SOX2P48431 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
SOX2P48431 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
SOX2P48431 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
SOX2P48431 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SOX2P48431 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC13.56□□□□□ -0.24
SOX2P48431 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms