Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 USP28-214ENST00000545540 3431 ntTSL 2 BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 AC097359.2-201ENST00000604992 2389 ntBASIC16.4■□□□□ 0.22
SIX2Q9NPC8 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 RNA5SP421-201ENST00000516864 134 ntBASIC16.4■□□□□ 0.22
SIX2Q9NPC8 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 CHCHD2P3-201ENST00000603038 451 ntBASIC16.4■□□□□ 0.22
SIX2Q9NPC8 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 HFE2-206ENST00000634927 506 ntTSL 4 BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 AP001267.2-201ENST00000532619 2086 ntBASIC16.4■□□□□ 0.22
SIX2Q9NPC8 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SIX2Q9NPC8 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 AC113367.3-201ENST00000508316 1912 ntBASIC16.39■□□□□ 0.21
SIX2Q9NPC8 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 MIR770-201ENST00000390219 98 ntBASIC16.39■□□□□ 0.21
SIX2Q9NPC8 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 HNRNPA1P40-201ENST00000426371 1278 ntBASIC16.39■□□□□ 0.21
SIX2Q9NPC8 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 GALT-202ENST00000450095 1280 ntTSL 2 BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC16.39■□□□□ 0.21
SIX2Q9NPC8 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 KRT8P22-201ENST00000562317 1415 ntBASIC16.38■□□□□ 0.21
SIX2Q9NPC8 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 AGER-206ENST00000375070 1463 ntTSL 5 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms