Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ZBED1P1-201ENST00000502364 1930 ntBASIC12.44□□□□□ -0.42
HMGB3O15347 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HMGB3O15347 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HMGB3O15347 FLII-221ENST00000578558 2377 ntTSL 5 BASIC12.44□□□□□ -0.42
HMGB3O15347 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC12.44□□□□□ -0.42
HMGB3O15347 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
HMGB3O15347 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HMGB3O15347 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
HMGB3O15347 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HMGB3O15347 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HMGB3O15347 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HMGB3O15347 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HMGB3O15347 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC12.44□□□□□ -0.42
HMGB3O15347 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
HMGB3O15347 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HMGB3O15347 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC12.44□□□□□ -0.42
HMGB3O15347 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
HMGB3O15347 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
HMGB3O15347 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HMGB3O15347 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HMGB3O15347 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
HMGB3O15347 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC12.43□□□□□ -0.42
HMGB3O15347 CLPX-201ENST00000300107 4695 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HMGB3O15347 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HMGB3O15347 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC12.43□□□□□ -0.42
HMGB3O15347 MADD-209ENST00000406482 5614 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
HMGB3O15347 RBM8A-204ENST00000583313 4961 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HMGB3O15347 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC12.43□□□□□ -0.42
HMGB3O15347 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
HMGB3O15347 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HMGB3O15347 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC12.43□□□□□ -0.42
HMGB3O15347 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HMGB3O15347 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
HMGB3O15347 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC12.43□□□□□ -0.42
HMGB3O15347 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HMGB3O15347 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC12.43□□□□□ -0.42
HMGB3O15347 OS9-204ENST00000389146 2091 ntTSL 2 BASIC12.43□□□□□ -0.42
HMGB3O15347 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC12.43□□□□□ -0.42
HMGB3O15347 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HMGB3O15347 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC12.43□□□□□ -0.42
HMGB3O15347 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC12.43□□□□□ -0.42
HMGB3O15347 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HMGB3O15347 RBM17P3-201ENST00000417687 1192 ntBASIC12.43□□□□□ -0.42
HMGB3O15347 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC12.43□□□□□ -0.42
HMGB3O15347 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC12.43□□□□□ -0.42
HMGB3O15347 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HMGB3O15347 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HMGB3O15347 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HMGB3O15347 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC12.43□□□□□ -0.42
HMGB3O15347 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
HMGB3O15347 AC091076.1-201ENST00000610741 619 ntBASIC12.43□□□□□ -0.42
HMGB3O15347 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC12.43□□□□□ -0.42
HMGB3O15347 RP1-207ENST00000637698 6177 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
HMGB3O15347 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
HMGB3O15347 CELSR3-201ENST00000164024 11956 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HMGB3O15347 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC12.43□□□□□ -0.42
HMGB3O15347 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HMGB3O15347 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HMGB3O15347 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC12.43□□□□□ -0.42
HMGB3O15347 RAPGEF4-AS1-202ENST00000435328 4625 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HMGB3O15347 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HMGB3O15347 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HMGB3O15347 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
HMGB3O15347 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HMGB3O15347 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HMGB3O15347 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HMGB3O15347 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HMGB3O15347 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC12.43□□□□□ -0.42
HMGB3O15347 SEC14L1-204ENST00000436233 5295 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
HMGB3O15347 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HMGB3O15347 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HMGB3O15347 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HMGB3O15347 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC12.43□□□□□ -0.42
HMGB3O15347 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HMGB3O15347 ZNF331-201ENST00000253144 5042 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HMGB3O15347 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HMGB3O15347 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HMGB3O15347 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
HMGB3O15347 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HMGB3O15347 AL928921.2-201ENST00000641325 2442 ntBASIC12.42□□□□□ -0.42
HMGB3O15347 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
HMGB3O15347 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC12.42□□□□□ -0.42
HMGB3O15347 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
HMGB3O15347 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HMGB3O15347 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
HMGB3O15347 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HMGB3O15347 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HMGB3O15347 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC12.42□□□□□ -0.42
HMGB3O15347 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC12.42□□□□□ -0.42
HMGB3O15347 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HMGB3O15347 TRIOBP-204ENST00000406386 10129 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
HMGB3O15347 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
HMGB3O15347 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
HMGB3O15347 AL358334.2-201ENST00000553648 4714 ntTSL 2 BASIC12.42□□□□□ -0.42
HMGB3O15347 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC12.42□□□□□ -0.42
HMGB3O15347 AMT-204ENST00000427987 1646 ntTSL 5 BASIC12.42□□□□□ -0.42
HMGB3O15347 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC12.42□□□□□ -0.42
HMGB3O15347 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC12.42□□□□□ -0.42
HMGB3O15347 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC12.42□□□□□ -0.42
HMGB3O15347 BET1L-202ENST00000332865 533 ntTSL 5 BASIC12.42□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms