Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CDH12P55289 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC14.4□□□□□ -0.1
CDH12P55289 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDH12P55289 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDH12P55289 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC14.4□□□□□ -0.1
CDH12P55289 AL133215.2-201ENST00000609242 977 ntBASIC14.4□□□□□ -0.1
CDH12P55289 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC14.4□□□□□ -0.1
CDH12P55289 AC009093.7-201ENST00000623853 1223 ntBASIC14.4□□□□□ -0.1
CDH12P55289 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDH12P55289 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.4□□□□□ -0.1
CDH12P55289 GRK6P1-201ENST00000400595 1711 ntBASIC14.4□□□□□ -0.1
CDH12P55289 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
CDH12P55289 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC14.4□□□□□ -0.1
CDH12P55289 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDH12P55289 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDH12P55289 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CDH12P55289 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDH12P55289 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CDH12P55289 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDH12P55289 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
CDH12P55289 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
CDH12P55289 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH12P55289 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC14.39□□□□□ -0.11
CDH12P55289 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC14.39□□□□□ -0.11
CDH12P55289 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH12P55289 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
CDH12P55289 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH12P55289 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH12P55289 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH12P55289 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CDH12P55289 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH12P55289 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH12P55289 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH12P55289 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH12P55289 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC14.39□□□□□ -0.11
CDH12P55289 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CDH12P55289 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
CDH12P55289 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH12P55289 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
CDH12P55289 FO393414.2-201ENST00000405153 598 ntBASIC14.39□□□□□ -0.11
CDH12P55289 HIST3H2BA-201ENST00000436555 524 ntBASIC14.39□□□□□ -0.11
CDH12P55289 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC14.39□□□□□ -0.11
CDH12P55289 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CDH12P55289 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC14.39□□□□□ -0.11
CDH12P55289 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC14.39□□□□□ -0.11
CDH12P55289 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC14.39□□□□□ -0.11
CDH12P55289 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
CDH12P55289 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
CDH12P55289 RN7SL828P-201ENST00000607615 303 ntBASIC14.39□□□□□ -0.11
CDH12P55289 AC007967.4-201ENST00000614700 386 ntBASIC14.39□□□□□ -0.11
CDH12P55289 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
CDH12P55289 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH12P55289 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH12P55289 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH12P55289 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC14.39□□□□□ -0.11
CDH12P55289 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH12P55289 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
CDH12P55289 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH12P55289 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC14.39□□□□□ -0.11
CDH12P55289 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC14.39□□□□□ -0.11
CDH12P55289 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH12P55289 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH12P55289 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH12P55289 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CDH12P55289 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC14.39□□□□□ -0.11
CDH12P55289 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH12P55289 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
CDH12P55289 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC14.39□□□□□ -0.11
CDH12P55289 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH12P55289 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH12P55289 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH12P55289 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH12P55289 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH12P55289 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC14.38□□□□□ -0.11
CDH12P55289 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC14.38□□□□□ -0.11
CDH12P55289 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
CDH12P55289 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.38□□□□□ -0.11
CDH12P55289 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC14.38□□□□□ -0.11
CDH12P55289 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
CDH12P55289 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC14.38□□□□□ -0.11
CDH12P55289 IMPDH1P4-201ENST00000445028 1534 ntBASIC14.38□□□□□ -0.11
CDH12P55289 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 RPS19-201ENST00000221975 500 ntTSL 3 BASIC14.38□□□□□ -0.11
CDH12P55289 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
CDH12P55289 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms