Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AL589702.1-201ENST00000641229 1509 ntBASIC12.67□□□□□ -0.38
CDX1P47902 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC12.67□□□□□ -0.38
CDX1P47902 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
CDX1P47902 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CDX1P47902 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
CDX1P47902 GGT3P-204ENST00000453783 1664 ntBASIC12.67□□□□□ -0.38
CDX1P47902 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC12.67□□□□□ -0.38
CDX1P47902 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CDX1P47902 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC12.67□□□□□ -0.38
CDX1P47902 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CDX1P47902 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CDX1P47902 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CDX1P47902 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CDX1P47902 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC12.67□□□□□ -0.38
CDX1P47902 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
CDX1P47902 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CDX1P47902 LINC02447-202ENST00000501888 2146 ntBASIC12.67□□□□□ -0.38
CDX1P47902 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
CDX1P47902 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC12.67□□□□□ -0.38
CDX1P47902 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CDX1P47902 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
CDX1P47902 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC12.67□□□□□ -0.38
CDX1P47902 GPI-205ENST00000586425 1799 ntTSL 5 BASIC12.67□□□□□ -0.38
CDX1P47902 AP003680.1-201ENST00000598970 3660 ntBASIC12.67□□□□□ -0.38
CDX1P47902 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
CDX1P47902 BASP1P1-201ENST00000430708 665 ntBASIC12.67□□□□□ -0.38
CDX1P47902 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC12.67□□□□□ -0.38
CDX1P47902 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC12.67□□□□□ -0.38
CDX1P47902 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CDX1P47902 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC12.67□□□□□ -0.38
CDX1P47902 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC12.67□□□□□ -0.38
CDX1P47902 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC12.67□□□□□ -0.38
CDX1P47902 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC12.67□□□□□ -0.38
CDX1P47902 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC12.67□□□□□ -0.38
CDX1P47902 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CDX1P47902 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC12.67□□□□□ -0.38
CDX1P47902 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CDX1P47902 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CDX1P47902 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CDX1P47902 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
CDX1P47902 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC12.67□□□□□ -0.38
CDX1P47902 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CDX1P47902 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
CDX1P47902 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC12.67□□□□□ -0.38
CDX1P47902 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC12.67□□□□□ -0.38
CDX1P47902 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CDX1P47902 AC113189.2-201ENST00000575310 1975 ntTSL 2 BASIC12.67□□□□□ -0.38
CDX1P47902 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC12.67□□□□□ -0.38
CDX1P47902 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC12.67□□□□□ -0.38
CDX1P47902 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CDX1P47902 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC12.66□□□□□ -0.38
CDX1P47902 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC12.66□□□□□ -0.38
CDX1P47902 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC12.66□□□□□ -0.38
CDX1P47902 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC12.66□□□□□ -0.38
CDX1P47902 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
CDX1P47902 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC12.66□□□□□ -0.38
CDX1P47902 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
CDX1P47902 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC12.66□□□□□ -0.38
CDX1P47902 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC12.66□□□□□ -0.38
CDX1P47902 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
CDX1P47902 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 SLC6A6P1-201ENST00000413933 1850 ntBASIC12.66□□□□□ -0.38
CDX1P47902 U82695.1-201ENST00000635752 1889 ntBASIC12.66□□□□□ -0.38
CDX1P47902 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
CDX1P47902 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC12.66□□□□□ -0.38
CDX1P47902 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC12.66□□□□□ -0.38
CDX1P47902 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC12.66□□□□□ -0.38
CDX1P47902 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC12.66□□□□□ -0.38
CDX1P47902 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC12.66□□□□□ -0.38
CDX1P47902 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC12.66□□□□□ -0.38
CDX1P47902 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC12.66□□□□□ -0.38
CDX1P47902 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC12.66□□□□□ -0.38
CDX1P47902 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC12.66□□□□□ -0.38
CDX1P47902 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 PPP6R2P1-201ENST00000450880 1275 ntBASIC12.66□□□□□ -0.38
CDX1P47902 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC12.66□□□□□ -0.38
CDX1P47902 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC12.66□□□□□ -0.38
CDX1P47902 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC12.66□□□□□ -0.38
CDX1P47902 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC12.66□□□□□ -0.38
CDX1P47902 AQP6-203ENST00000551733 849 ntTSL 3 BASIC12.66□□□□□ -0.38
CDX1P47902 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC12.66□□□□□ -0.38
CDX1P47902 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC12.66□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms