Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC15.98■□□□□ 0.15
PTPN9P43378 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC15.98■□□□□ 0.15
PTPN9P43378 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN9P43378 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN9P43378 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN9P43378 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN9P43378 AL359258.3-201ENST00000622910 2331 ntBASIC15.97■□□□□ 0.15
PTPN9P43378 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC15.97■□□□□ 0.15
PTPN9P43378 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC15.97■□□□□ 0.15
PTPN9P43378 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN9P43378 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN9P43378 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN9P43378 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC15.97■□□□□ 0.15
PTPN9P43378 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN9P43378 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC15.97■□□□□ 0.15
PTPN9P43378 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
PTPN9P43378 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN9P43378 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN9P43378 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN9P43378 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC15.97■□□□□ 0.15
PTPN9P43378 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN9P43378 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
PTPN9P43378 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC15.97■□□□□ 0.15
PTPN9P43378 HLA-K-203ENST00000430151 1046 ntBASIC15.97■□□□□ 0.15
PTPN9P43378 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC15.97■□□□□ 0.15
PTPN9P43378 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC15.97■□□□□ 0.15
PTPN9P43378 IFT20-206ENST00000578122 834 ntTSL 2 BASIC15.97■□□□□ 0.15
PTPN9P43378 IFT20-208ENST00000578985 831 ntTSL 3 BASIC15.97■□□□□ 0.15
PTPN9P43378 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC15.97■□□□□ 0.15
PTPN9P43378 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
PTPN9P43378 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC15.97■□□□□ 0.15
PTPN9P43378 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC15.97■□□□□ 0.15
PTPN9P43378 WFDC1-204ENST00000613603 549 ntBASIC15.97■□□□□ 0.15
PTPN9P43378 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
PTPN9P43378 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN9P43378 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN9P43378 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN9P43378 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC15.97■□□□□ 0.15
PTPN9P43378 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
PTPN9P43378 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN9P43378 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
PTPN9P43378 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN9P43378 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN9P43378 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC15.97■□□□□ 0.15
PTPN9P43378 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN9P43378 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC15.96■□□□□ 0.15
PTPN9P43378 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN9P43378 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN9P43378 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN9P43378 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN9P43378 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN9P43378 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN9P43378 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC15.96■□□□□ 0.15
PTPN9P43378 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN9P43378 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN9P43378 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN9P43378 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN9P43378 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
PTPN9P43378 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC15.96■□□□□ 0.15
PTPN9P43378 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN9P43378 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN9P43378 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC15.96■□□□□ 0.15
PTPN9P43378 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
PTPN9P43378 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN9P43378 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN9P43378 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN9P43378 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC15.96■□□□□ 0.15
PTPN9P43378 COX11-202ENST00000571584 1108 ntTSL 2 BASIC15.96■□□□□ 0.15
PTPN9P43378 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN9P43378 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN9P43378 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN9P43378 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN9P43378 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC15.96■□□□□ 0.15
PTPN9P43378 LILRP1-201ENST00000444199 1370 ntBASIC15.96■□□□□ 0.15
PTPN9P43378 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN9P43378 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
PTPN9P43378 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
PTPN9P43378 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN9P43378 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.14
PTPN9P43378 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC15.96■□□□□ 0.14
PTPN9P43378 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
PTPN9P43378 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
PTPN9P43378 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.14
PTPN9P43378 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC15.96■□□□□ 0.14
PTPN9P43378 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
PTPN9P43378 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PTPN9P43378 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTPN9P43378 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC15.95■□□□□ 0.14
PTPN9P43378 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC15.95■□□□□ 0.14
PTPN9P43378 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTPN9P43378 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTPN9P43378 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC15.95■□□□□ 0.14
PTPN9P43378 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC15.95■□□□□ 0.14
PTPN9P43378 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTPN9P43378 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC15.95■□□□□ 0.14
PTPN9P43378 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
PTPN9P43378 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
PTPN9P43378 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
PTPN9P43378 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC15.95■□□□□ 0.14
PTPN9P43378 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms