Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RHBDD3Q9Y3P4 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RHBDD3Q9Y3P4 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RHBDD3Q9Y3P4 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RHBDD3Q9Y3P4 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RHBDD3Q9Y3P4 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC13.57□□□□□ -0.24
RHBDD3Q9Y3P4 PPP6R2P1-201ENST00000450880 1275 ntBASIC13.57□□□□□ -0.24
RHBDD3Q9Y3P4 SATB1-217ENST00000493952 626 ntTSL 3 BASIC13.57□□□□□ -0.24
RHBDD3Q9Y3P4 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC13.57□□□□□ -0.24
RHBDD3Q9Y3P4 VPS29-207ENST00000549970 818 ntTSL 3 BASIC13.57□□□□□ -0.24
RHBDD3Q9Y3P4 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
RHBDD3Q9Y3P4 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
RHBDD3Q9Y3P4 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
RHBDD3Q9Y3P4 PRR29-209ENST00000582540 967 ntTSL 2 BASIC13.57□□□□□ -0.24
RHBDD3Q9Y3P4 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC13.57□□□□□ -0.24
RHBDD3Q9Y3P4 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC13.57□□□□□ -0.24
RHBDD3Q9Y3P4 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC13.57□□□□□ -0.24
RHBDD3Q9Y3P4 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
RHBDD3Q9Y3P4 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
RHBDD3Q9Y3P4 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
RHBDD3Q9Y3P4 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC13.57□□□□□ -0.24
RHBDD3Q9Y3P4 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC13.57□□□□□ -0.24
RHBDD3Q9Y3P4 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
RHBDD3Q9Y3P4 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RHBDD3Q9Y3P4 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
RHBDD3Q9Y3P4 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
RHBDD3Q9Y3P4 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
RHBDD3Q9Y3P4 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RHBDD3Q9Y3P4 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
RHBDD3Q9Y3P4 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC13.57□□□□□ -0.24
RHBDD3Q9Y3P4 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RHBDD3Q9Y3P4 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RHBDD3Q9Y3P4 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 AC005089.1-201ENST00000619486 2241 ntBASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 ABR-205ENST00000544583 5595 ntTSL 2 BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 Z92544.3-201ENST00000624747 417 ntBASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 MROH4P-201ENST00000431302 1578 ntBASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 GRN-214ENST00000589265 1632 ntTSL 5 BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC13.56□□□□□ -0.24
RHBDD3Q9Y3P4 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
RHBDD3Q9Y3P4 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
RHBDD3Q9Y3P4 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
RHBDD3Q9Y3P4 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
RHBDD3Q9Y3P4 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC13.55□□□□□ -0.24
RHBDD3Q9Y3P4 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
RHBDD3Q9Y3P4 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
RHBDD3Q9Y3P4 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
RHBDD3Q9Y3P4 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
RHBDD3Q9Y3P4 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
RHBDD3Q9Y3P4 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
RHBDD3Q9Y3P4 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC13.55□□□□□ -0.24
RHBDD3Q9Y3P4 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC13.55□□□□□ -0.24
RHBDD3Q9Y3P4 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC13.55□□□□□ -0.24
RHBDD3Q9Y3P4 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
RHBDD3Q9Y3P4 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC13.55□□□□□ -0.24
RHBDD3Q9Y3P4 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
RHBDD3Q9Y3P4 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
RHBDD3Q9Y3P4 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
RHBDD3Q9Y3P4 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms