Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 CTCFL-218ENST00000608440 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 TBC1D2-204ENST00000375066 3198 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 KDM2B-215ENST00000542973 3170 ntTSL 2 BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 PLCXD1-201ENST00000381657 5507 ntAPPRIS P2 TSL 5 BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 VAMP7-202ENST00000286448 2646 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 DLEC1-201ENST00000308059 6426 ntAPPRIS P2 TSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 POLR1B-216ENST00000537335 4961 ntTSL 2 BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 PPP6C-203ENST00000451402 4349 ntTSL 2 BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 KCNS2-202ENST00000521839 4340 ntAPPRIS P1 TSL 5 BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 MIR34AHG-203ENST00000635687 4211 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 FANCC-201ENST00000289081 4585 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 TRMT61A-202ENST00000389749 3229 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 NUMA1-233ENST00000616538 6998 ntAPPRIS ALT2 TSL 5 BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 ALDH9A1-201ENST00000354775 2696 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 SNIP1-201ENST00000296215 4605 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 SRC-204ENST00000373578 4630 ntAPPRIS P1 TSL 5 BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 FBLN2-207ENST00000492059 4193 ntAPPRIS P4 TSL 2 BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 AC092117.1-201ENST00000621230 3250 ntBASIC9.55□□□□□ -0.88
LINC00643Q86TS7 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 FCHSD1-209ENST00000522783 2477 ntTSL 5 BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 AC015712.2-201ENST00000560351 3688 ntTSL 2 BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 ITGA2B-201ENST00000262407 3333 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 TMEM57-201ENST00000374343 3917 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 OR2V2-202ENST00000641492 4777 ntAPPRIS P1 BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 ZFHX2-202ENST00000419474 9182 ntAPPRIS P1 TSL 5 BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 PNPLA8-208ENST00000453144 3366 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 ARHGEF33-201ENST00000398800 4300 ntAPPRIS P1 TSL 5 BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 NHEJ1-201ENST00000356853 2094 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 SLC25A17-217ENST00000544408 2060 ntTSL 2 BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 FAM78A-203ENST00000372271 3966 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 HTR5A-201ENST00000287907 2912 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 TOP3BP1-201ENST00000420768 1380 ntBASIC9.54□□□□□ -0.88
LINC00643Q86TS7 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 SLC26A6-205ENST00000395550 2589 ntAPPRIS P3 TSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 SNCA-204ENST00000394989 3167 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 PCDHGA9-201ENST00000573521 4605 ntAPPRIS P3 TSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 OCA2-201ENST00000353809 3068 ntAPPRIS ALT2 TSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 AL359915.2-202ENST00000440150 2469 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 RPGRIP1-202ENST00000400017 3940 ntAPPRIS P2 TSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 PPP2R1B-204ENST00000426998 1888 ntAPPRIS ALT2 TSL 2 BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 CACUL1-201ENST00000369151 11311 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 GTF2IRD2B-203ENST00000472837 3560 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 ARHGEF2-201ENST00000313667 2958 ntAPPRIS ALT1 TSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 PCSK2-202ENST00000377899 4674 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 AL136116.3-201ENST00000402907 1138 ntBASIC9.54□□□□□ -0.88
LINC00643Q86TS7 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 SLC29A4P2-201ENST00000504749 1089 ntBASIC9.54□□□□□ -0.88
LINC00643Q86TS7 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 AC011467.4-201ENST00000594891 528 ntBASIC9.54□□□□□ -0.88
LINC00643Q86TS7 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 AL590326.2-201ENST00000625139 305 ntBASIC9.54□□□□□ -0.88
LINC00643Q86TS7 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 ATP13A2-203ENST00000452699 3981 ntAPPRIS ALT2 TSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 PITPNM3-202ENST00000421306 6945 ntAPPRIS ALT2 TSL 2 BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 SLC28A1-203ENST00000394573 2769 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 SNX25-201ENST00000264694 3264 ntAPPRIS P1 TSL 5 BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 CDC20-201ENST00000310955 1675 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC9.54□□□□□ -0.88
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms