RNA–Protein interactions for RNA: ENST00000296215.7

SNIP1-201, Transcript of Smad nuclear interacting protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNIP1, Length 4,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-201ENST00000296215 PELP1Q8IZL8 1130 aaKnown RBP20.75■□□□□ 0.91
SNIP1-201ENST00000296215 MYT1Q01538 1121 aa20.66■□□□□ 0.9
SNIP1-201ENST00000296215 TTBK1Q5TCY1 1321 aaPredicted RBP19.28■□□□□ 0.68
SNIP1-201ENST00000296215 ERICH6Q7L0X2 663 aa18.96■□□□□ 0.63
SNIP1-201ENST00000296215 CENPBP07199 599 aaPredicted RBP18.69■□□□□ 0.58
SNIP1-201ENST00000296215 HRCP23327 699 aa18.69■□□□□ 0.58
SNIP1-201ENST00000296215 PCGF6Q9BYE7 350 aa18.53■□□□□ 0.56
SNIP1-201ENST00000296215 PPARGC1BQ86YN6 1023 aaKnown RBP18.23■□□□□ 0.51
SNIP1-201ENST00000296215 ZEB1P37275 1124 aaPredicted RBP18.18■□□□□ 0.5
SNIP1-201ENST00000296215 BCL11AQ9H165 835 aa18.16■□□□□ 0.5
SNIP1-201ENST00000296215 GTF3C3Q9Y5Q9 886 aa18■□□□□ 0.47
SNIP1-201ENST00000296215 SCAF1Q9H7N4 1312 aaKnown RBP17.99■□□□□ 0.47
SNIP1-201ENST00000296215 CCER1Q8TC90 406 aaPredicted RBP17.99■□□□□ 0.47
SNIP1-201ENST00000296215 PRKCSHP14314 528 aaPredicted RBP17.94■□□□□ 0.46
SNIP1-201ENST00000296215 YTHDC1Q96MU7 727 aaKnown RBP17.87■□□□□ 0.45
SNIP1-201ENST00000296215 ACIN1Q9UKV3 1341 aaKnown RBP17.81■□□□□ 0.44
SNIP1-201ENST00000296215 SLC24A1O60721 1099 aa17.79■□□□□ 0.44
SNIP1-201ENST00000296215 SUPT5HO00267 1087 aaKnown RBP17.6■□□□□ 0.41
SNIP1-201ENST00000296215 ANP32EQ9BTT0 268 aa17.57■□□□□ 0.4
SNIP1-201ENST00000296215 EIF5BO60841 1220 aaKnown RBP17.54■□□□□ 0.4
SNIP1-201ENST00000296215 FAM9AQ8IZU1 332 aaPredicted RBP17.49■□□□□ 0.39
SNIP1-201ENST00000296215 NEFLP07196 543 aa17.47■□□□□ 0.39
SNIP1-201ENST00000296215 NEUROD1Q13562 356 aa17.43■□□□□ 0.38
SNIP1-201ENST00000296215 GLIPR1L2Q4G1C9 344 aa17.41■□□□□ 0.38
SNIP1-201ENST00000296215 TRIM26Q12899 539 aaPredicted RBP17.39■□□□□ 0.37
SNIP1-201ENST00000296215 RTL5Q5HYW3 569 aaPredicted RBP17.37■□□□□ 0.37
SNIP1-201ENST00000296215 DIEXFQ68CQ4 756 aaKnown RBP17.34■□□□□ 0.37
SNIP1-201ENST00000296215 MYT1LQ9UL68 1186 aa17.27■□□□□ 0.35
SNIP1-201ENST00000296215 APLP2Q06481 763 aa17.15■□□□□ 0.34
SNIP1-201ENST00000296215 CSRNP3Q8WYN3 585 aa17.13■□□□□ 0.33
SNIP1-201ENST00000296215 RANGAP1P46060 587 aaPredicted RBP17.05■□□□□ 0.32
SNIP1-201ENST00000296215 DCAF8L2P0C7V8 631 aa17.05■□□□□ 0.32
SNIP1-201ENST00000296215 BCANQ96GW7 911 aa17.01■□□□□ 0.31
SNIP1-201ENST00000296215 DAXXQ9UER7 740 aaPredicted RBP16.93■□□□□ 0.3
SNIP1-201ENST00000296215 NISCHQ9Y2I1 1504 aa16.93■□□□□ 0.3
SNIP1-201ENST00000296215 EHMT2Q96KQ7 1210 aa16.93■□□□□ 0.3
SNIP1-201ENST00000296215 PODXL2Q9NZ53 605 aa16.92■□□□□ 0.3
SNIP1-201ENST00000296215 CLSPNQ9HAW4 1339 aa16.91■□□□□ 0.3
SNIP1-201ENST00000296215 CCDC136Q96JN2 1154 aa16.84■□□□□ 0.29
SNIP1-201ENST00000296215 CDK11AQ9UQ88 783 aaPredicted RBP16.82■□□□□ 0.28
SNIP1-201ENST00000296215 RTN4Q9NQC3 1192 aaKnown RBP16.81■□□□□ 0.28
SNIP1-201ENST00000296215 ANO8Q9HCE9 1232 aaPredicted RBP16.81■□□□□ 0.28
SNIP1-201ENST00000296215 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.8■□□□□ 0.28
SNIP1-201ENST00000296215 PKNOX2Q96KN3 472 aa16.79■□□□□ 0.28
SNIP1-201ENST00000296215 NBR1Q14596 966 aa16.76■□□□□ 0.27
SNIP1-201ENST00000296215 ZNF316A6NFI3 1004 aaPredicted RBP16.74■□□□□ 0.27
SNIP1-201ENST00000296215 DEKP35659 375 aaKnown RBP16.73■□□□□ 0.27
SNIP1-201ENST00000296215 SHROOM4Q9ULL8 1493 aa16.7■□□□□ 0.26
SNIP1-201ENST00000296215 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.68■□□□□ 0.26
SNIP1-201ENST00000296215 ERICH6BQ5W0A0 696 aa16.68■□□□□ 0.26
SNIP1-201ENST00000296215 FKBP8Q14318 412 aa16.55■□□□□ 0.24
SNIP1-201ENST00000296215 UBE2Q2Q8WVN8 375 aa16.55■□□□□ 0.24
SNIP1-201ENST00000296215 LOC105371045A0A1W2PR82 267 aa16.54■□□□□ 0.24
SNIP1-201ENST00000296215 ANP32AP39687 249 aaKnown RBP16.53■□□□□ 0.24
SNIP1-201ENST00000296215 TSHZ2Q9NRE2 1034 aa16.51■□□□□ 0.23
SNIP1-201ENST00000296215 A0A0U1RQG5 324 aaPredicted RBP16.5■□□□□ 0.23
SNIP1-201ENST00000296215 VSIG10Q8N0Z9 540 aa16.5■□□□□ 0.23
SNIP1-201ENST00000296215 SALL2Q9Y467 1007 aaPredicted RBP16.47■□□□□ 0.23
SNIP1-201ENST00000296215 CHIC1Q5VXU3 224 aa16.44■□□□□ 0.22
SNIP1-201ENST00000296215 SUPT16HQ9Y5B9 1047 aaKnown RBP16.44■□□□□ 0.22
SNIP1-201ENST00000296215 PLEKHG5O94827 1062 aa16.39■□□□□ 0.21
SNIP1-201ENST00000296215 RBM19Q9Y4C8 960 aaKnown RBP16.39■□□□□ 0.21
SNIP1-201ENST00000296215 ZBTB47Q9UFB7 747 aaPredicted RBP16.37■□□□□ 0.21
SNIP1-201ENST00000296215 NEFMP07197 916 aa16.32■□□□□ 0.2
SNIP1-201ENST00000296215 ITGAEP38570 1179 aa16.32■□□□□ 0.2
SNIP1-201ENST00000296215 MIER1Q8N108 512 aa16.31■□□□□ 0.2
SNIP1-201ENST00000296215 NAP1L5Q96NT1 182 aaPredicted RBP16.26■□□□□ 0.19
SNIP1-201ENST00000296215 PDE4CQ08493 712 aa16.26■□□□□ 0.19
SNIP1-201ENST00000296215 TNNT2P45379 298 aaPredicted RBP16.24■□□□□ 0.19
SNIP1-201ENST00000296215 NPM2Q86SE8 214 aaKnown RBP16.22■□□□□ 0.19
SNIP1-201ENST00000296215 TIMELESSQ9UNS1 1208 aa16.2■□□□□ 0.18
SNIP1-201ENST00000296215 NOP58Q9Y2X3 529 aaKnown RBP16.2■□□□□ 0.18
SNIP1-201ENST00000296215 RSPH6AQ9H0K4 717 aa16.2■□□□□ 0.18
SNIP1-201ENST00000296215 NCLP19338 710 aaKnown RBP16.19■□□□□ 0.18
SNIP1-201ENST00000296215 CDK11BP21127 795 aaKnown RBP16.18■□□□□ 0.18
SNIP1-201ENST00000296215 HSP90AA1P07900 732 aaKnown RBP16.15■□□□□ 0.18
SNIP1-201ENST00000296215 DCAF1Q9Y4B6 1507 aa16.15■□□□□ 0.18
SNIP1-201ENST00000296215 HSP90AA2PQ14568 343 aaPredicted RBP16.14■□□□□ 0.17
SNIP1-201ENST00000296215 ZNF326Q5BKZ1 582 aaKnown RBP16.11■□□□□ 0.17
SNIP1-201ENST00000296215 TRIM41Q8WV44 630 aa16.09■□□□□ 0.17
SNIP1-201ENST00000296215 AMER1Q5JTC6 1135 aaPredicted RBP16.06■□□□□ 0.16
SNIP1-201ENST00000296215 PDIA4P13667 645 aaKnown RBP16.01■□□□□ 0.15
SNIP1-201ENST00000296215 PPM1GO15355 546 aaPredicted RBP16■□□□□ 0.15
SNIP1-201ENST00000296215 IL27Q8NEV9 243 aa15.98■□□□□ 0.15
SNIP1-201ENST00000296215 ARXQ96QS3 562 aa15.98■□□□□ 0.15
SNIP1-201ENST00000296215 HNRNPUL2Q1KMD3 747 aaKnown RBP15.98■□□□□ 0.15
SNIP1-201ENST00000296215 POLR3GLQ9BT43 218 aa15.97■□□□□ 0.15
SNIP1-201ENST00000296215 CNGB1Q14028 1251 aaPredicted RBP15.96■□□□□ 0.15
SNIP1-201ENST00000296215 ZMYND15Q9H091 742 aa15.96■□□□□ 0.15
SNIP1-201ENST00000296215 LAS1LQ9Y4W2 734 aaKnown RBP15.94■□□□□ 0.14
SNIP1-201ENST00000296215 ARID4BQ4LE39 1312 aaPredicted RBP15.93■□□□□ 0.14
SNIP1-201ENST00000296215 ANP32CO43423 234 aa15.92■□□□□ 0.14
SNIP1-201ENST00000296215 TRIM44Q96DX7 344 aaPredicted RBP15.92■□□□□ 0.14
SNIP1-201ENST00000296215 PNNQ9H307 717 aaKnown RBP15.91■□□□□ 0.14
SNIP1-201ENST00000296215 ANP32BQ92688 251 aaKnown RBP15.91■□□□□ 0.14
SNIP1-201ENST00000296215 IRX6P78412 446 aaPredicted RBP15.87■□□□□ 0.13
SNIP1-201ENST00000296215 FANCIQ9NVI1 1328 aa15.87■□□□□ 0.13
SNIP1-201ENST00000296215 TRIM52Q96A61 297 aa15.85■□□□□ 0.13
SNIP1-201ENST00000296215 CANXP27824 592 aaKnown RBP15.79■□□□□ 0.12
SNIP1-201ENST00000296215 CCDC180Q9P1Z9 1646 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms