Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 AP000845.1-201ENST00000581677 2131 ntBASIC14.83□□□□□ -0.04
VPS29Q9UBQ0 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS29Q9UBQ0 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 BTBD7P1-201ENST00000447253 1453 ntBASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 AC106881.1-201ENST00000605849 3329 ntBASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 LBH-203ENST00000404397 543 ntTSL 4 BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 HLA-DRB6-201ENST00000411500 1235 ntBASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 METTL21AP1-201ENST00000438852 635 ntBASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 AC114501.2-201ENST00000439631 535 ntBASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 IGHV3-42-201ENST00000520410 361 ntBASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 AC004461.2-201ENST00000629517 803 ntBASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 AC012508.2-201ENST00000567613 1472 ntBASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS29Q9UBQ0 REXO1L2P-201ENST00000425429 2069 ntBASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 PON3-203ENST00000427422 894 ntTSL 3 BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 RAB35-202ENST00000534951 939 ntTSL 2 BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 DUX4L27-201ENST00000554796 1261 ntBASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 AC092337.1-201ENST00000568699 1129 ntBASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 AC000095.1-201ENST00000603208 874 ntBASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 ACE3P-201ENST00000423435 1973 ntBASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms