Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LRCH3Q96II8 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LRCH3Q96II8 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LRCH3Q96II8 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LRCH3Q96II8 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.62■□□□□ 0.25
LRCH3Q96II8 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LRCH3Q96II8 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.62■□□□□ 0.25
LRCH3Q96II8 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC16.62■□□□□ 0.25
LRCH3Q96II8 ACTBP7-201ENST00000418351 1124 ntBASIC16.62■□□□□ 0.25
LRCH3Q96II8 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LRCH3Q96II8 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC16.62■□□□□ 0.25
LRCH3Q96II8 FABP5P3-202ENST00000477993 1027 ntTSL 5 BASIC16.62■□□□□ 0.25
LRCH3Q96II8 MARK2P5-201ENST00000507649 634 ntBASIC16.62■□□□□ 0.25
LRCH3Q96II8 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC16.62■□□□□ 0.25
LRCH3Q96II8 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.62■□□□□ 0.25
LRCH3Q96II8 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC16.62■□□□□ 0.25
LRCH3Q96II8 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC16.62■□□□□ 0.25
LRCH3Q96II8 MIR4754-201ENST00000582477 89 ntBASIC16.62■□□□□ 0.25
LRCH3Q96II8 RN7SL163P-201ENST00000583100 276 ntBASIC16.62■□□□□ 0.25
LRCH3Q96II8 AC138894.2-201ENST00000602838 371 ntBASIC16.62■□□□□ 0.25
LRCH3Q96II8 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC16.62■□□□□ 0.25
LRCH3Q96II8 AC233280.19-201ENST00000633223 136 ntBASIC16.62■□□□□ 0.25
LRCH3Q96II8 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC16.62■□□□□ 0.25
LRCH3Q96II8 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
LRCH3Q96II8 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LRCH3Q96II8 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.62■□□□□ 0.25
LRCH3Q96II8 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LRCH3Q96II8 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LRCH3Q96II8 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
LRCH3Q96II8 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LRCH3Q96II8 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.62■□□□□ 0.25
LRCH3Q96II8 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
LRCH3Q96II8 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
LRCH3Q96II8 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
LRCH3Q96II8 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
LRCH3Q96II8 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LRCH3Q96II8 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC16.61■□□□□ 0.25
LRCH3Q96II8 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LRCH3Q96II8 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC16.61■□□□□ 0.25
LRCH3Q96II8 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LRCH3Q96II8 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LRCH3Q96II8 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LRCH3Q96II8 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.61■□□□□ 0.25
LRCH3Q96II8 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LRCH3Q96II8 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.61■□□□□ 0.25
LRCH3Q96II8 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
LRCH3Q96II8 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
LRCH3Q96II8 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC16.61■□□□□ 0.25
LRCH3Q96II8 BNIP3P1-202ENST00000550043 1585 ntBASIC16.61■□□□□ 0.25
LRCH3Q96II8 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
LRCH3Q96II8 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
LRCH3Q96II8 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LRCH3Q96II8 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC16.61■□□□□ 0.25
LRCH3Q96II8 KLF2P2-201ENST00000416807 1039 ntBASIC16.61■□□□□ 0.25
LRCH3Q96II8 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LRCH3Q96II8 AC109587.1-201ENST00000482368 962 ntTSL 3 BASIC16.61■□□□□ 0.25
LRCH3Q96II8 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC16.61■□□□□ 0.25
LRCH3Q96II8 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC16.61■□□□□ 0.25
LRCH3Q96II8 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC16.61■□□□□ 0.25
LRCH3Q96II8 AC124947.2-201ENST00000547118 1133 ntBASIC16.61■□□□□ 0.25
LRCH3Q96II8 FOS-204ENST00000554617 796 ntTSL 2 BASIC16.61■□□□□ 0.25
LRCH3Q96II8 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC16.61■□□□□ 0.25
LRCH3Q96II8 BX539320.1-201ENST00000623759 877 ntBASIC16.61■□□□□ 0.25
LRCH3Q96II8 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LRCH3Q96II8 AL162727.3-201ENST00000635661 2787 ntBASIC16.61■□□□□ 0.25
LRCH3Q96II8 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
LRCH3Q96II8 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LRCH3Q96II8 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
LRCH3Q96II8 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LRCH3Q96II8 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
LRCH3Q96II8 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LRCH3Q96II8 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LRCH3Q96II8 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LRCH3Q96II8 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC16.61■□□□□ 0.25
LRCH3Q96II8 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.61■□□□□ 0.25
LRCH3Q96II8 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
LRCH3Q96II8 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LRCH3Q96II8 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LRCH3Q96II8 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.61■□□□□ 0.25
LRCH3Q96II8 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
LRCH3Q96II8 AL391256.1-201ENST00000443260 1855 ntBASIC16.61■□□□□ 0.25
LRCH3Q96II8 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LRCH3Q96II8 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
LRCH3Q96II8 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC16.6■□□□□ 0.25
LRCH3Q96II8 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
LRCH3Q96II8 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LRCH3Q96II8 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LRCH3Q96II8 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC16.6■□□□□ 0.25
LRCH3Q96II8 OR6D1P-203ENST00000641209 4860 ntBASIC16.6■□□□□ 0.25
LRCH3Q96II8 AL138799.1-201ENST00000448213 1675 ntBASIC16.6■□□□□ 0.25
LRCH3Q96II8 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
LRCH3Q96II8 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.6■□□□□ 0.25
LRCH3Q96II8 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LRCH3Q96II8 AC004899.1-201ENST00000424687 1714 ntBASIC16.6■□□□□ 0.25
LRCH3Q96II8 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.6■□□□□ 0.25
LRCH3Q96II8 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.6■□□□□ 0.25
LRCH3Q96II8 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
LRCH3Q96II8 RNU1-114P-201ENST00000365297 166 ntBASIC16.6■□□□□ 0.25
LRCH3Q96II8 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LRCH3Q96II8 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms