Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
MSX2P35548 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
MSX2P35548 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
MSX2P35548 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.81□□□□□ -0.04
MSX2P35548 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC14.81□□□□□ -0.04
MSX2P35548 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
MSX2P35548 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
MSX2P35548 CYP4F24P-201ENST00000586049 1580 ntBASIC14.81□□□□□ -0.04
MSX2P35548 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX2P35548 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC14.81□□□□□ -0.04
MSX2P35548 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC14.81□□□□□ -0.04
MSX2P35548 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX2P35548 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
MSX2P35548 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC14.8□□□□□ -0.04
MSX2P35548 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX2P35548 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX2P35548 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX2P35548 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX2P35548 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC14.8□□□□□ -0.04
MSX2P35548 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC14.8□□□□□ -0.04
MSX2P35548 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX2P35548 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX2P35548 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
MSX2P35548 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX2P35548 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
MSX2P35548 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX2P35548 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC14.8□□□□□ -0.04
MSX2P35548 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
MSX2P35548 METTL26-205ENST00000397666 726 ntTSL 2 BASIC14.8□□□□□ -0.04
MSX2P35548 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC14.8□□□□□ -0.04
MSX2P35548 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC14.8□□□□□ -0.04
MSX2P35548 AC009947.1-201ENST00000444350 727 ntBASIC14.8□□□□□ -0.04
MSX2P35548 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC14.8□□□□□ -0.04
MSX2P35548 UNC93B7-201ENST00000509439 705 ntBASIC14.8□□□□□ -0.04
MSX2P35548 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
MSX2P35548 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC14.8□□□□□ -0.04
MSX2P35548 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC14.8□□□□□ -0.04
MSX2P35548 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
MSX2P35548 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC14.8□□□□□ -0.04
MSX2P35548 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX2P35548 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC14.8□□□□□ -0.04
MSX2P35548 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX2P35548 AQP6-205ENST00000618286 829 ntTSL 5 BASIC14.8□□□□□ -0.04
MSX2P35548 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX2P35548 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX2P35548 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC14.8□□□□□ -0.04
MSX2P35548 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX2P35548 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
MSX2P35548 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
MSX2P35548 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
MSX2P35548 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX2P35548 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX2P35548 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC14.8□□□□□ -0.04
MSX2P35548 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX2P35548 AC084364.1-201ENST00000551967 1556 ntBASIC14.8□□□□□ -0.04
MSX2P35548 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX2P35548 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX2P35548 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
MSX2P35548 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC14.8□□□□□ -0.04
MSX2P35548 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX2P35548 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC14.8□□□□□ -0.04
MSX2P35548 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC14.8□□□□□ -0.04
MSX2P35548 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX2P35548 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
MSX2P35548 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX2P35548 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC14.8□□□□□ -0.04
MSX2P35548 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
MSX2P35548 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
MSX2P35548 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC14.79□□□□□ -0.04
MSX2P35548 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC14.79□□□□□ -0.04
MSX2P35548 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
MSX2P35548 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
MSX2P35548 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
MSX2P35548 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
MSX2P35548 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
MSX2P35548 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
MSX2P35548 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
MSX2P35548 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
MSX2P35548 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
MSX2P35548 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
MSX2P35548 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
MSX2P35548 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
MSX2P35548 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
MSX2P35548 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
MSX2P35548 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
MSX2P35548 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
MSX2P35548 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC14.79□□□□□ -0.04
MSX2P35548 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
MSX2P35548 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
MSX2P35548 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC14.79□□□□□ -0.04
MSX2P35548 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC14.79□□□□□ -0.04
MSX2P35548 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC14.79□□□□□ -0.04
MSX2P35548 AF186996.4-201ENST00000467186 377 ntBASIC14.79□□□□□ -0.04
MSX2P35548 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC14.79□□□□□ -0.04
MSX2P35548 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
MSX2P35548 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC14.79□□□□□ -0.04
MSX2P35548 UNC93B6-202ENST00000528242 690 ntBASIC14.79□□□□□ -0.04
MSX2P35548 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
MSX2P35548 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
MSX2P35548 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms